I got error messages as below (full log file attached):
Traceback (most recent call last):
File "/apps/cent7/anaconda/5.1.0-py27/lib/python2.7/runpy.py", line 174, in _run_module_as_main
"main", fname, loader, pkg_name)
File "/apps/cent7/anaconda/5.1.0-py27/lib/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/assembly/allmaps.py", line 1871, in
main()
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/assembly/allmaps.py", line 827, in main
p.dispatch(globals())
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/apps/base.py", line 96, in dispatch
globalsaction
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/assembly/allmaps.py", line 1512, in path
gaptype="map")
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/formats/agp.py", line 671, in order_to_agp
size = sizes[ctg]
KeyError: 'C531'
Hello,
When I run the command:
python -m jcvi.assembly.allmaps path JM-15.bed cgi/Crassostrea_gigas.oyster_v9.dna.toplevel.fa
I got error messages as below (full log file attached):
Traceback (most recent call last): File "/apps/cent7/anaconda/5.1.0-py27/lib/python2.7/runpy.py", line 174, in _run_module_as_main "main", fname, loader, pkg_name) File "/apps/cent7/anaconda/5.1.0-py27/lib/python2.7/runpy.py", line 72, in _run_code exec code in run_globals File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/assembly/allmaps.py", line 1871, in
main()
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/assembly/allmaps.py", line 827, in main
p.dispatch(globals())
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/apps/base.py", line 96, in dispatch
globalsaction
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/assembly/allmaps.py", line 1512, in path
gaptype="map")
File "/home/yin168/.local/lib/python2.7/site-packages/jcvi/formats/agp.py", line 671, in order_to_agp
size = sizes[ctg]
KeyError: 'C531'
How should this issue be resolved?
Thanks!
allmaps.txt