what's the meaning about the green lines of Pairwise synteny visualization

tanghaibao / jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

BSD 2-Clause "Simplified" License

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what's the meaning about the green lines of Pairwise synteny visualization #184

Closed LHXqwq closed 4 years ago

LHXqwq commented 4 years ago

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tanghaibao commented 4 years ago

@LHXqwq

The boundary of chromosomes - you are seeing lots of lines towards the top in your plot as there are lots of small contigs/scaffolds included in the plot. Use --skipempty to remove the small contigs that contain no syntenic blocks, to minimize cluttering in those cases.

LHXqwq commented 4 years ago

Thank you very much, my problem is solved, rest early