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tanghaibao / jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics
BSD 2-Clause "Simplified" License
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How to set the color of genes when we plot the microsynteny procedure? #217

Closed awesomedeer closed 4 years ago

awesomedeer commented 4 years ago

Hi Haibao Jcvi is an amazing job! I just find that the color of genes when I do microsynteny were green and blue . I want to give the gene their own color. I can't not find the parameters used to change colors neither. Any ideas about that? Do I need to change the code? Thanks for your attention!

tanghaibao commented 4 years ago

@awesomedeer

At this point, we do not expose the configuration of gene colors. This is the relevant code:

https://github.com/tanghaibao/jcvi/blob/c71a47fa3602905cdc8468ba1c011fe2028686fa/jcvi/graphics/synteny.py#L41

So forward genes are blue ('b') and backward genes are green ('g') and are currently fixed in the code. Just modify these two colors if you need.

Haibao

awesomedeer commented 4 years ago

Thanks. I also found that. Hope designating color to the genes is a new feature later. Really thanks for your efforts!