Switch to using genomepy as a dependency instead of SizesFile

tanghaibao / jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

BSD 2-Clause "Simplified" License

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Open tanghaibao opened 4 months ago

tanghaibao commented 4 months ago

genomepy.Genome helps with getting the sizes of contigs and also getting index. We should consolidate with formats.sizes.SizesFile.