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tanghaibao / jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics
BSD 2-Clause "Simplified" License
755 stars 186 forks source link

BioNano data #8

Closed wyim-pgl closed 8 years ago

wyim-pgl commented 8 years ago

Dear Haibao,

Is there anyway to use Bionano data?

The tutorial shows only opgen data and I think it's a little bit difficult to use.

But I just want to check it.

Won

tanghaibao commented 8 years ago

@ascendo I have not tested ALLMAPS on BioNano data. In theory, if you can format the BED file properly (see examples in tutorial) you may be able to get it to run. But it is currently unsupported.

wyim-pgl commented 8 years ago

Thank you for your answer.