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tanghaibao
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jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
BSD 2-Clause "Simplified" License
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Pairwise syntensy search process aborted
#578
UpalabdhaD
closed
11 months ago
7
Update test
#577
tanghaibao
closed
1 year ago
0
Private reporting of a vulnerability request
#576
Sim4n6
closed
1 year ago
2
Python 3.7 actions fails on macOS due to missing _bz2
#575
tanghaibao
closed
1 year ago
0
Gaps
#574
tanghaibao
closed
1 year ago
0
Draw dotplot for a certain chromosomes order
#573
Wanliwill
closed
1 year ago
2
Doubt about the jcvi.formats.gff bed
#572
z626093820
closed
1 week ago
3
老师您好!请帮我解答一下的问题:
#571
Daishoulu
closed
4 weeks ago
2
Fix self BLAST naming issue with float (thanks @AzumaSerenThePatriot,@dwpeng, #567)
#570
tanghaibao
closed
1 year ago
0
replace logging's debug function
#569
dwpeng
closed
1 year ago
6
A better debug message.
#568
dwpeng
closed
1 year ago
0
Self comparison bug
#567
AzumaSerenThePatriot
closed
10 months ago
3
When inputing parts of genes, gene `SGR00005418.1` could not find anchors in another species
#566
YANGMEI0127
opened
1 year ago
2
Simplify kmcop
#565
tanghaibao
closed
1 year ago
0
Updates around kmc and kmcop
#564
tanghaibao
closed
1 year ago
0
Divergence
#563
tanghaibao
closed
1 year ago
0
Help interpreting ALLMAPS dotplots
#562
faye-romero
closed
1 year ago
2
Expose --self_remove in compara.ortholog
#561
tanghaibao
closed
1 year ago
0
Move AnchorFile to compara.base
#560
tanghaibao
closed
1 year ago
0
highlight one chromosome using different color
#559
guo-cheng
closed
1 year ago
0
--genelabels= won't work.
#558
lczqd
opened
1 year ago
5
jcvi.graphics.karyotype:IndexError: list index out of range
#557
trubohe
opened
1 year ago
4
Invalid RGBA argument: '"#FB9A99"'
#556
cfz1998
closed
1 year ago
2
IndexError: list index out of range
#555
suying77
closed
4 weeks ago
2
bug for jcvi.graphics.synteny model
#554
DengHAU
closed
1 year ago
4
Problem with jcvi installation
#553
filonico
closed
1 year ago
4
Miscellaneous plotting karyotype shape change.
#552
cutykaka
closed
1 year ago
3
karyotype
#551
cutykaka
closed
1 year ago
0
Microsynteny ValueError: invalid literal for int() with base 10: '.'
#550
erya-song
closed
1 year ago
6
Latex availability logging and error handling update
#549
Adamtaranto
closed
1 year ago
0
Improve error logging for external tools
#548
Adamtaranto
closed
1 year ago
1
Support Microsynteny plots with genome alignment data
#547
Adamtaranto
opened
1 year ago
3
Abort if lastdb/lastal fails rather than generating 0 anchors (thansk @Adamtaranto, #545)
#546
tanghaibao
closed
1 year ago
0
Add checks to jcvi.compara.catalog ortholog before running LAST
#545
Adamtaranto
closed
1 year ago
7
--iter=1 key error
#544
SAMANDOLL
closed
9 months ago
3
jcvi.compara.catalog ortholog latex ERROR `type1cm.sty' not found
#543
renmiaozhen
closed
1 year ago
3
jcvi.graphics.karyotype layout error
#542
cutykaka
closed
1 year ago
0
jcvi.assembly.geneticmap breakpoint with MSTmap
#541
wyim-pgl
closed
1 year ago
2
Whether each square represents a gene?
#540
xiaoguizz
closed
8 months ago
1
compara catalog.py error
#539
ABDULLAHGUJJAR
closed
1 year ago
3
WARNING scaffold97size618721 not in aiptasia_genome.bed but scaffold97size618721 exists in bed
#538
Wongolini
opened
1 year ago
5
Rotation
#537
tanghaibao
closed
1 year ago
0
Attempting to run the example given but got 0 Anchors found
#536
Wongolini
closed
1 year ago
4
Add option --chrstyle to karyotype
#535
tanghaibao
closed
1 year ago
0
many chromosomes inversion, is it true ?
#534
guo-cheng
closed
1 year ago
2
Parsing error for *cds_from_genomic.fna.gz from NCBI's Genome database
#533
gunjanpandey
closed
5 days ago
3
Why chromosome ID is not displayed completely ?
#532
guo-cheng
closed
1 year ago
1
question in jcvi.assembly.kmer
#531
xingjianfeng100
closed
1 year ago
1
graphics.synteny 如何更改染色体之间线的粗细和颜色
#530
shuazhenyang
closed
1 year ago
4
Stringency
#529
jonnyPizza
opened
1 year ago
0
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