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tanjimin
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C.Origami
C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
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GRAM importance score
#49
thomas-reimonn
opened
2 months ago
2
Issues with Training the C.Origami Model Using Only Sequence Data and Integrating Multi-Species Data
#48
hanshandong2024
opened
2 months ago
4
Issues with Training the C.Origami Model Using Only Sequence Data and Integrating Multi-Species Data
#47
hanshandong2024
closed
2 months ago
0
Training and prediction at 5kb resolution
#46
zhang-jiankun
closed
2 months ago
2
Reverse-compliment probably patch
#45
kaboroevich
closed
2 months ago
1
Reverse-compliment probably patch
#44
kaboroevich
closed
3 months ago
0
Independant chance of returning sequence complement
#43
kaboroevich
closed
2 months ago
4
A problem in the PositionalEncoding model code
#42
kir1to455
opened
5 months ago
3
Adding different ChIP-seq during the training phase ?
#41
kir1to455
closed
5 months ago
1
How to makr trans interaction contacts prediction?
#40
linfanxiao
closed
5 months ago
5
insulation score
#39
wawpaopao
opened
6 months ago
5
reproduce
#38
wawpaopao
opened
6 months ago
4
Using CTCF chip-exo without input
#37
re2srm
closed
7 months ago
5
How to balance mcool files.
#36
1944498970
opened
8 months ago
1
Single-cell ATACseq adaptability
#35
archieandrews10
opened
8 months ago
1
What method was used in the paper to convert the predictions into valid pairs?
#34
rebeccaronai
opened
8 months ago
1
Update screening.py
#33
tanjimin
closed
9 months ago
0
The pre-trained models of other cell types
#32
lhy0322
opened
10 months ago
2
About comparison with Original HiC matrix
#31
ahmedabbas811
opened
1 year ago
3
Questions about performance comparison with deepC
#30
My-laniaKeA
closed
1 year ago
2
Request for evaluation code
#29
My-laniaKeA
closed
1 year ago
2
`examples/prediction.sh` generates blank Hi-C image for chromosome 15
#28
My-laniaKeA
closed
1 year ago
2
How to merge the predicted matrix and convert it back to valid pairs ?
#27
YCMaCY
closed
1 year ago
2
Can C.Origami predict the 3D chromatin with out CTCF ChIP-seq input data?
#26
YCMaCY
closed
1 year ago
4
Question about downscaling 10-kb matrix to 8192 bp resolution
#25
zhang-jiankun
closed
1 year ago
4
Adding chromosome-wide prediction
#24
tanjimin
opened
1 year ago
6
Questions when I process the Hi-C data
#23
YCMaCY
closed
1 year ago
3
Could HiC-data be replaced by HiC-data generated by other comformation capture experiments like HiChIP or ChIA-PET?
#22
Gemma-Zhang-326
closed
1 year ago
2
Dev
#21
tanjimin
closed
1 year ago
0
Update README.md
#20
tanjimin
closed
1 year ago
0
Merge changes from main
#19
tanjimin
closed
1 year ago
0
Wrong file download link
#18
rozyangno
closed
1 year ago
1
Merge from main
#17
tanjimin
closed
1 year ago
0
Dev
#16
tanjimin
closed
1 year ago
0
Merge from main
#15
tanjimin
closed
1 year ago
0
Dev
#14
tanjimin
closed
1 year ago
0
Merge
#13
tanjimin
closed
1 year ago
0
Added training instructions (#10)
#12
tanjimin
closed
1 year ago
0
Added training instructions (#10)
#11
ninashenker
closed
1 year ago
0
Train
#10
ninashenker
closed
1 year ago
0
Dev rebase
#9
tanjimin
closed
1 year ago
0
Merge pull request #6 from tanjimin/dev
#8
tanjimin
closed
1 year ago
0
Merge pull request #6 from tanjimin/dev
#7
tanjimin
closed
1 year ago
0
Dev merge
#6
tanjimin
closed
1 year ago
0
First release
#5
tanjimin
closed
1 year ago
0
command line interface added
#4
ninashenker
closed
1 year ago
0
Imgs added
#3
ninashenker
closed
1 year ago
0
Tutorial
#2
ninashenker
closed
1 year ago
0
cleaned up code
#1
ninashenker
closed
1 year ago
0