tanlongzhi / dip-c

Tools to analyze Dip-C (or other 3C/Hi-C) data
61 stars 18 forks source link

Error: generate the 3D structure #62

Open XiongGZ opened 10 months ago

XiongGZ commented 10 months ago

Hi, @tanlongzhi What can I do to solve this problem (met when I try to generate the 3D structure)?

Command: hickit -s1 -M -i $sample.impute.pairs.gz -Sr1m -c1 -r10m -c2 -b4m -b1m -O $sample.1m.3dg -b200k -O $sample.200k.3dg -D5 -b50k -O $sample.50k.3dg -D5 -b20k -O $sample.20k.3dg

Error: hickit: main.c:103: main: Assertion 'm' failed. Aborted (core dumped)

impute.pairs.gz: image

a50044758 commented 10 months ago

I encountered the same error; did you manage to solve it in the end?

XiongGZ commented 10 months ago

I encountered the same error; did you manage to solve it in the end?

Maybe, you can check if pos1 and pos2 are bigger than the chromosome size (in the file head).

a50044758 commented 10 months ago

I encountered the same error; did you manage to solve it in the end?

Maybe, you can check if pos1 and pos2 are bigger than the chromosome size (in the file head).

你好,能加你微信吗?我这边都是用hickit软件自己生成的结果,按道理不应该有问题,我的微信:bluesky_2004

XiongGZ commented 10 months ago

I encountered the same error; did you manage to solve it in the end?

Maybe, you can check if pos1 and pos2 are bigger than the chromosome size (in the file head).

你好,能加你微信吗?我这边都是用hickit软件自己生成的结果,按道理不应该有问题,我的微信:bluesky_2004

好的,我已经加你微信了,麻烦通过一下