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tansey-lab
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bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
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Add IRIS Profile
#203
jeffquinn-msk
closed
2 weeks ago
0
Add Celltypist Step
#202
jeffquinn-msk
opened
2 weeks ago
0
Add Memray, Change to PyTorch base image
#201
jeffquinn-msk
closed
2 weeks ago
0
Out of Memory Error During Bleed Correction on CytAssist Capture Area
#200
francescocister
opened
2 weeks ago
7
Fix Antibody Conditional
#199
jeffquinn-msk
closed
4 months ago
0
Read MTX Files if h5 not Available
#198
jeffquinn-msk
closed
4 months ago
0
Add Pytest Workflow Ignore
#197
jeffquinn-msk
closed
4 months ago
0
Handle Visium Antibody Capture Data
#196
jeffquinn-msk
closed
4 months ago
0
Fix Marker Gene Outputs
#195
jeffquinn-msk
closed
4 months ago
0
Add validate_args=False for Multinomial
#194
jeffquinn-msk
closed
5 months ago
0
Randomly getting: ValueError: Expected parameter probs of distribution Categorical to satisfy the constraint Simplex()
#193
bmlett
opened
5 months ago
3
Fix STP Module Input Defs
#192
jeffquinn-msk
closed
5 months ago
0
Add Two Versions of Rank Genes Plot, With and Without Sharey
#191
jeffquinn-msk
closed
5 months ago
0
Fix Reader Again
#190
jeffquinn-msk
closed
5 months ago
0
Handle Yet Another Slightly Different Spatial CSV Format
#189
jeffquinn-msk
closed
5 months ago
0
Use New Spatial Regularizer
#188
jeffquinn-msk
closed
5 months ago
0
Fix Plot Layout, Adjust Default Params
#187
jeffquinn-msk
closed
5 months ago
0
Fix Plot Colorscale
#186
jeffquinn-msk
closed
5 months ago
0
Improve Bleed Correction Plot
#185
jeffquinn-msk
closed
5 months ago
0
Allow Passing Expression Profiles into STP For Cell Type Naming
#184
jeffquinn-msk
closed
6 months ago
0
Add STP to Nextflow
#183
jeffquinn-msk
closed
6 months ago
0
Fix Documentation Errors
#182
jeffquinn-msk
closed
5 months ago
0
Add New Spatial Transcriptional Programs Model
#181
jeffquinn-msk
closed
6 months ago
0
How to adjust the plotting parameters?
#180
bmlett
opened
6 months ago
7
Don't Run Tests in Container
#179
jeffquinn-msk
closed
6 months ago
1
Update Pyproject toml
#178
jeffquinn-msk
closed
6 months ago
0
Bump to V1.0.0
#177
jeffquinn-msk
closed
6 months ago
0
Fix Connectivity Graph (V1)
#176
jeffquinn-msk
closed
6 months ago
0
Fix Visium Neighbor Graph
#175
jeffquinn-msk
closed
6 months ago
0
Cannot have number of splits n_splits=15 greater than the number of samples: n_samples=2.
#174
JihyunKiminGithub
opened
6 months ago
6
Use Spatial Guide by Default
#173
jeffquinn-msk
closed
6 months ago
0
Add Auto Container Bump Action
#172
jeffquinn-msk
closed
6 months ago
0
Don't Materialize the Reads Trace
#171
jeffquinn-msk
closed
6 months ago
0
Remove MCMC Inference and STP
#170
jeffquinn-msk
closed
6 months ago
0
Fix Plot Xaxis
#169
jeffquinn-msk
closed
7 months ago
0
Bump Container
#168
jeffquinn-msk
closed
7 months ago
0
add relative mean expression
#167
jeffquinn-msk
closed
7 months ago
0
Fix X Axis on Rank Genes Plots
#166
jeffquinn-msk
closed
7 months ago
0
Handle Pathsep In Cell Type Name
#165
jeffquinn-msk
closed
7 months ago
0
Bump Container
#164
jeffquinn-msk
closed
7 months ago
0
Improve Deconvolution Plots
#163
jeffquinn-msk
closed
7 months ago
0
Bump Container
#162
jeffquinn-msk
closed
7 months ago
0
Bump Container
#161
jeffquinn-msk
closed
7 months ago
0
Add Expression Truth Names
#160
jeffquinn-msk
closed
7 months ago
0
Bump Container Version
#159
jeffquinn-msk
closed
7 months ago
0
Account for Dummy Celltypes
#158
jeffquinn-msk
closed
7 months ago
0
Bump Container Versions
#157
jeffquinn-msk
closed
7 months ago
0
Wire Through Gene Expression Names
#156
jeffquinn-msk
closed
7 months ago
0
Increase Expression Truth Weighting, Add Dummy Cell Types
#155
jeffquinn-msk
closed
7 months ago
0
Bump Container
#154
jeffquinn-msk
closed
8 months ago
0
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