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tansey-lab / nuc2seg

Whole cell segmentation for single-molecule spatial transcriptomics
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Fix Baysor PostProcessing #60

Closed jeffquinn-msk closed 8 months ago

jeffquinn-msk commented 8 months ago

The GeoJSON files baysor produces cant be read by geopandas (theres some degenerate linerings and also the geojson is structured as a GeometryCollection instead which is annoying so we write our own geojson parser here