Closed odunbar closed 4 years ago
hm, somehow the pull request stopped updating after I reset the 2f97dff commit and force-pushed; it's weird, should we create a new pull request? the branch itself is updated
(there are really no conflicts anymore, they were due to that 2f97dff commit; now everything should be fine)
UPD: ah, nevermind, it was probably Github maintenance late last night
@odunbar @jinlong83 I think I'm okay with merging this now... didn't rename "accuracy" -> "performance" yet because Ollie's performance stuff is in the other branch.
The only files left are:
accuracy_estimation.py
, the main one for estimating accuracy/performanceaccuracy_estimation_script.py
, which is used for running the main one in parallel on desktopsaccuracy_estimation_sbatch.sh
, which is used for running the main one in parallel on the clusterThe latter two do not quite belong here, but since this is called sandbox
, it's okay for now. Once we have a repository for experiments, we can make a separate scripts
directory there, for example.
Is there anything else left?
Also, does one of you want to create the new repository? something like risk-networks-paper-experiments
, or just risk-networks-experiments
? It's probably about time (:
I don't know what you mean by repository here. like a full copy of the current setup? Because currently we are still developing stuff. I feel like the repository should be created when the development is finished for the paper-examples
. I.e once we have produced them we make a copy.
the new repository -- I mean, just the files from examples/paper
and examples/da-sandbox
the underscore modules go into something like covidrisk/
(which will be a package there), and the experiments go into experiments/
-- something like that?
It's true that we're still developing, but we might as well continue developing there -- it'll also be a git repository after all.
Co-authored with all coders!
They will add details below as appropriate.
In this new
examples/da-paper
folder we would like the following list of examples:da-sandbox/saving_contact_networks_epidemic.py
da-sandbox/forward_filter_epidemic.py
da-sandbox/backward_forward_filter_epidemic.py
This branch is purely to keep the running set of examples.
We have also Resolved #132 by using a 2-step data assimilation scheme.