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TARDIS - Temperature And Radiative Diffusion In Supernovae
https://tardis-sn.github.io/tardis
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Gammaray packet initialization documentation #2821

Closed CePowers closed 2 months ago

CePowers commented 2 months ago

:pencil: Description

Type: :memo: documentation

I created a new file for the gamma ray documentation within the physics walkthrough. I put information on packet initialization, including the packet properties.

:vertical_traffic_light: Testing

How did you test these changes?

:ballot_box_with_check: Checklist

Note: If you are not allowed to perform any of these actions, ping (@) a contributor.

tardis-bot commented 2 months ago

*beep* *bop*

Hi, human.

The docs workflow has failed :x:

Click here to see the build log.

tardis-bot commented 2 months ago

*beep* *bop* Hi human, I ran ruff on the latest commit (f447d41dbfc42ead8e61c7ac856b221a8a172a6f). Here are the outputs produced. Results can also be downloaded as artifacts here. Summarised output:

```diff 391 E902 [ ] No such file or directory (os error 2) 219 E999 [ ] SyntaxError: Expected ',', found name 137 F401 [*] `IPython.display.FileLinks` imported but unused 82 F405 [ ] `Abundance` may be undefined, or defined from star imports 39 F821 [ ] Undefined name `IonNumberDensityHeNLTE` 30 E402 [ ] Module level import not at top of cell 27 E703 [*] Statement ends with an unnecessary semicolon 24 F841 [*] Local variable `beta_rad` is assigned to but never used 19 F403 [ ] `from ._astropy_init import *` used; unable to detect undefined names 11 E722 [ ] Do not use bare `except` 7 E712 [*] Avoid equality comparisons to `False`; use `if not ...:` for false checks 3 E701 [ ] Multiple statements on one line (colon) 2 E401 [*] Multiple imports on one line 2 E702 [ ] Multiple statements on one line (semicolon) 2 E741 [ ] Ambiguous variable name: `l` 2 F523 [*] `.format` call has unused arguments at position(s): 0, 1 2 F811 [ ] Redefinition of unused `test_csvy_finds_csv_first_line` from cell 2, line 7 1 E713 [*] Test for membership should be `not in` 1 F402 [ ] Import `material` from line 2 shadowed by loop variable ```

Complete output(might be large):

```diff .ci-helpers/download_reference_data.sh:1:1: E902 No such file or directory (os error 2) .ci-helpers/get_current_version.py:1:1: E902 No such file or directory (os error 2) .ci-helpers/get_min_docstr_cov.py:1:1: E902 No such file or directory (os error 2) .ci-helpers/get_next_version.py:1:1: E902 No such file or directory (os error 2) .ci-helpers/update_credits.py:1:1: E902 No such file or directory (os error 2) .codecov.yml:1:1: E902 No such file or directory (os error 2) .coveragerc:5:16: E999 SyntaxError: Expected an expression .git-blame-ignore-revs:2:5: E999 SyntaxError: Simple statements must be separated by newlines or semicolons .github/FUNDING.yml:15:14: E999 SyntaxError: Expected a statement .github/ISSUE_TEMPLATE.md:3:1: E999 SyntaxError: Got unexpected token ` .github/PULL_REQUEST_TEMPLATE.md:1:1: E999 SyntaxError: Expected a statement .github/actions/setup_env/action.yml:1:1: E902 No such file or directory (os error 2) .github/actions/setup_lfs/action.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/archive/dispatcher.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/archive/update-refdata.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/benchmarks.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/build-docs.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/clean-docs.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/codespell.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/codestyle.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/docstr-cov.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/documentation-build.yml:6:4: E999 SyntaxError: Expected an expression .github/workflows/mailmap.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/post-release.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/pre-release.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/release.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/stardis-tests.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/tardis-research-papers.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/tests.yml:1:1: E902 No such file or directory (os error 2) .github/workflows/update-changelog.yml:6:4: E999 SyntaxError: Expected an expression .gitignore:2:2: E999 SyntaxError: Expected an expression .gitmodules:1:12: E999 SyntaxError: Expected ',', found string .mailmap:1:6: E999 SyntaxError: Simple statements must be separated by newlines or semicolons .orcid.csv:2:28: E999 SyntaxError: Invalid decimal integer literal .pre-commit-config.yaml:1:1: E902 No such file or directory (os error 2) .ruff.toml:1:1: E902 No such file or directory (os error 2) CHANGELOG.md:411:10: E999 SyntaxError: Expected ',', found name CITATION.cff:1:1: E902 No such file or directory (os error 2) CODE_OF_CONDUCT.md:4:5: E999 SyntaxError: Simple statements must be separated by newlines or semicolons CONTRIBUTING.md:3:4: E999 SyntaxError: Simple statements must be separated by newlines or semicolons GOVERNANCE.md:3:8: E999 SyntaxError: Simple statements must be separated by newlines or semicolons LICENSE.rst:1:15: E999 SyntaxError: Simple statements must be separated by newlines or semicolons MANIFEST.in:1:9: E999 SyntaxError: Simple statements must be separated by newlines or semicolons README.rst:1:1: E999 SyntaxError: Expected an expression README_TEMPLATE.rst:1:1: E902 No such file or directory (os error 2) ah_bootstrap.py:69:1: E402 Module level import not at top of file ah_bootstrap.py:111:1: E722 Do not use bare `except` ah_bootstrap.py:120:1: E402 Module level import not at top of file ah_bootstrap.py:122:1: E402 Module level import not at top of file ah_bootstrap.py:123:1: E402 Module level import not at top of file ah_bootstrap.py:125:1: E402 Module level import not at top of file ah_bootstrap.py:126:1: E402 Module level import not at top of file asv.conf.json:1:1: E902 No such file or directory (os error 2) azure-pipelines/compare-refdata.yml:7:11: E999 SyntaxError: Expected an expression azure-pipelines/release-version.yml:7:11: E999 SyntaxError: Expected an expression azure-pipelines/run-unit-tests.yml:4:9: E999 SyntaxError: Expected an expression azure-pipelines/templates/default.yml:4:12: E999 SyntaxError: Expected an expression azure-pipelines/update-zenodo-json.yml:8:11: E999 SyntaxError: Expected an expression benchmarks/asv_by_release.bash:1:1: E902 No such file or directory (os error 2) benchmarks/benchmark_base.py:1:1: E902 No such file or directory (os error 2) benchmarks/data/tardis_configv1_benchmark.yml:1:1: E902 No such file or directory (os error 2) benchmarks/opacities_opacity.py:1:1: E902 No such file or directory (os error 2) benchmarks/opacities_opacity_state.py:1:1: E902 No such file or directory (os error 2) benchmarks/run_tardis.py:1:1: E902 No such file or directory (os error 2) benchmarks/spectrum_formal_integral.py:1:1: E902 No such file or directory (os error 2) benchmarks/transport_geometry_calculate_distances.py:1:1: E902 No such file or directory (os error 2) benchmarks/transport_montecarlo_estimators_radfield_estimator_calcs.py:1:1: E902 No such file or directory (os error 2) benchmarks/transport_montecarlo_interaction.py:1:1: E902 No such file or directory (os error 2) benchmarks/transport_montecarlo_main_loop.py:1:1: E902 No such file or directory (os error 2) benchmarks/transport_montecarlo_packet_trackers.py:1:1: E902 No such file or directory (os error 2) benchmarks/transport_montecarlo_single_packet_loop.py:1:1: E902 No such file or directory (os error 2) benchmarks/transport_montecarlo_vpacket.py:1:1: E902 No such file or directory (os error 2) binder/environment.yml:1:1: E902 No such file or directory (os error 2) binder/postBuild:1:1: E902 No such file or directory (os error 2) blondin:1:1: E902 No such file or directory (os error 2) conda-linux-64.lock:5:1: E999 SyntaxError: Expected class, function definition or async function definition after decorator conda-lock.yml:1:1: E902 No such file or directory (os error 2) conda-osx-64.lock:1:1: E902 No such file or directory (os error 2) conda-osx-arm64.lock:1:1: E902 No such file or directory (os error 2) docs/.nojekyll:1:1: F821 Undefined name `downloads` docs/.nojekyll:2:1: F821 Undefined name `_static` docs/.nojekyll:3:1: F821 Undefined name `_sources` docs/.nojekyll:4:1: F821 Undefined name `_images` docs/CHANGELOG.md:411:10: E999 SyntaxError: Expected ',', found name docs/CODE_OF_CONDUCT.md:4:5: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/CONTRIBUTING.md:3:4: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/Makefile:5:16: E999 SyntaxError: Expected an expression docs/_static/tardis.css:1:1: E999 SyntaxError: Expected a statement docs/_templates/layout.html:1:2: E999 SyntaxError: Expected an expression docs/_templates/redirect_file.html:1:1: E902 No such file or directory (os error 2) docs/conf.py:17:1: E401 [*] Multiple imports on one line docs/conf.py:42:1: E402 Module level import not at top of file docs/conf.py:109:1: E402 Module level import not at top of file docs/contributing/CHANGELOG.md:1:1: E902 No such file or directory (os error 2) docs/contributing/CONTRIBUTING.md:1:1: E902 No such file or directory (os error 2) docs/contributing/development/benchmarks.rst:1:1: E902 No such file or directory (os error 2) docs/contributing/development/code_quality.rst:1:1: E902 No such file or directory (os error 2) docs/contributing/development/documentation_guidelines.rst:1:1: E902 No such file or directory (os error 2) docs/contributing/development/update_refdata.rst:1:1: E902 No such file or directory (os error 2) docs/contributing/in_progress/index.rst:1:1: E902 No such file or directory (os error 2) docs/contributing/in_progress/nebular_phase/gammaray_deposition.ipynb:1:1: E902 No such file or directory (os error 2) docs/contributing/in_progress/nebular_phase/positronium.rst:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/benchmark.ipynb:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/index.rst:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/profiling/cpu_threads_dict_128_threads_1_node.csv:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/profiling/index.rst:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/profiling/profiling_example.ipynb:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/profiling/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/profiling/tardis_prof.png:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/profiling/tardis_profiling_threads.ipynb:1:1: E902 No such file or directory (os error 2) docs/contributing/tools/profiling/threads_dict_128_threads_1_node.csv:1:1: E902 No such file or directory (os error 2) docs/credits.rst:1:1: E999 SyntaxError: Expected a statement docs/development/azure_links.inc:2:1: E999 SyntaxError: Expected a statement docs/development/continuous_integration.rst:1:1: E999 SyntaxError: Expected an expression docs/development/debug_numba.rst:1:1: E999 SyntaxError: Expected an expression docs/development/developer_faq.rst:1:1: E999 SyntaxError: Expected an expression docs/development/documentation_preview.rst:1:1: E999 SyntaxError: Expected an expression docs/development/git_links.inc:1:1: E999 SyntaxError: Expected a statement docs/development/git_workflow.rst:1:1: E999 SyntaxError: Expected a statement docs/development/images/Bootcamp-Fork.png:1:1: E902 stream did not contain valid UTF-8 docs/development/images/branch_dropdown.png:1:1: E902 stream did not contain valid UTF-8 docs/development/images/pull_button.png:1:1: E902 stream did not contain valid UTF-8 docs/development/images/variables.png:1:1: E902 stream did not contain valid UTF-8 docs/development/index.rst:1:1: E999 SyntaxError: Expected an expression docs/development/integration.yml:6:8: E999 SyntaxError: Expected an expression docs/development/issues.rst:1:1: E999 SyntaxError: Expected an expression docs/development/known_projects.inc:1:1: E999 SyntaxError: Expected a statement docs/development/links.inc:1:1: E999 SyntaxError: Expected a statement docs/development/matterbridge.inc:2:1: E999 SyntaxError: Expected a statement docs/development/matterbridge.inc:7:45: E701 Multiple statements on one line (colon) docs/development/matterbridge.inc:8:50: E701 Multiple statements on one line (colon) docs/development/matterbridge.rst:1:1: E999 SyntaxError: Expected an expression docs/development/running_tests.rst:1:1: E999 SyntaxError: Expected an expression docs/development/this_project.inc:1:1: E999 SyntaxError: Expected a statement docs/development/update_refdata.rst:1:1: E999 SyntaxError: Expected an expression docs/faq.rst:1:1: E902 No such file or directory (os error 2) docs/graphics/dilution_factor.png:1:1: E902 No such file or directory (os error 2) docs/index.rst:1:1: E999 SyntaxError: Expected a statement docs/installation.rst:1:1: E999 SyntaxError: Expected a statement docs/io/configuration/components/atomic/atomic_data.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/debug.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/index.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/models/abundancecust/abund.dat:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/models/converters/arepo_to_tardis.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/models/converters/species55.txt:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/models/densitycust/density.dat:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/models/index.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/montecarlo.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/plasma.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/spectrum.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/components/supernova.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/index.rst:1:1: E902 No such file or directory (os error 2) docs/io/configuration/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/io/configuration/tutorial_read_configuration.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/grid/example.yml:1:1: E902 No such file or directory (os error 2) docs/io/grid/example_grid.txt:1:1: E902 No such file or directory (os error 2) docs/io/grid/how_to_TardisGridTutorial.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/hdf/index.rst:1:1: E902 No such file or directory (os error 2) docs/io/images/cus_abund_add_element.gif:1:1: E902 No such file or directory (os error 2) docs/io/images/cus_abund_add_shell.gif:1:1: E902 No such file or directory (os error 2) docs/io/images/cus_abund_edit_abundance.gif:1:1: E902 No such file or directory (os error 2) docs/io/images/cus_abund_edit_density.gif:1:1: E902 No such file or directory (os error 2) docs/io/images/cus_abund_norm.gif:1:1: E902 No such file or directory (os error 2) docs/io/images/custom_abundance_widget.png:1:1: E902 No such file or directory (os error 2) docs/io/images/energy_level_widget_demo.gif:1:1: E902 No such file or directory (os error 2) docs/io/images/energy_level_widget_options.gif:1:1: E902 No such file or directory (os error 2) docs/io/images/packet_diagram.jpg:1:1: E902 No such file or directory (os error 2) docs/io/images/progress_bars_demo.gif:1:1: E902 No such file or directory (os error 2) docs/io/images/sdec_ply_interaction.gif:1:1: E902 No such file or directory (os error 2) docs/io/model/cmfgen_model.csv:1:1: E902 No such file or directory (os error 2) docs/io/model/how_to_read_cmfgen_model.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/model/how_to_read_stella_model.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/model/index.rst:1:1: E902 No such file or directory (os error 2) docs/io/model/mesa.stella.dat:1:1: E902 No such file or directory (os error 2) docs/io/optional/how_to_custom_source.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/optional/index.rst:1:1: E902 No such file or directory (os error 2) docs/io/optional/tardis_config_logger.yml:1:1: E902 No such file or directory (os error 2) docs/io/optional/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/io/optional/tutorial_callback_example.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/optional/tutorial_logging_configuration.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/output/callback.rst:1:1: E902 No such file or directory (os error 2) docs/io/output/default_plasma_graph.png:1:1: E902 No such file or directory (os error 2) docs/io/output/how_to_plasma_graph.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/output/how_to_rpacket_tracking.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/output/how_to_to_hdf.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/output/index.rst:1:1: E902 No such file or directory (os error 2) docs/io/output/plasma_graph_args.png:1:1: E902 No such file or directory (os error 2) docs/io/output/plasma_graph_no_eq.png:1:1: E902 No such file or directory (os error 2) docs/io/output/plasma_graph_scaled.png:1:1: E902 No such file or directory (os error 2) docs/io/output/progress_bars.rst:1:1: E902 No such file or directory (os error 2) docs/io/output/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/io/output/vpacket_logging.rst:1:1: E902 No such file or directory (os error 2) docs/io/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/io/visualization/demo_observed_spectrum.dat:1:1: E902 No such file or directory (os error 2) docs/io/visualization/how_to_abundance_widget.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/visualization/how_to_generating_widgets.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/visualization/how_to_liv_plot.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/visualization/how_to_sdec_plot.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/visualization/index.rst:1:1: E902 No such file or directory (os error 2) docs/io/visualization/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/io/visualization/tutorial_convergence_plot.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/visualization/tutorial_montecarlo_packet_visualization.ipynb:1:1: E902 No such file or directory (os error 2) docs/io/visualization/using_widgets.rst:1:1: E902 No such file or directory (os error 2) docs/make.bat:1:7: E999 SyntaxError: Expected newline, found name docs/multiindex_isotope_decay_data.ipynb:1:1: E902 No such file or directory (os error 2) docs/news.rst:3:6: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/physics/images/expansion_animation.gif:1:1: E902 No such file or directory (os error 2) docs/physics/images/formal_integral_2d.ggb:1:1: E902 No such file or directory (os error 2) docs/physics/images/formal_integral_2d_above.png:1:1: E902 No such file or directory (os error 2) docs/physics/images/formal_integral_2d_below.png:1:1: E902 No such file or directory (os error 2) docs/physics/images/formal_integral_sphere.ggb:1:1: E902 No such file or directory (os error 2) docs/physics/images/formal_integral_sphere.jpg:1:1: E902 No such file or directory (os error 2) docs/physics/images/propagation_direction.ggb:1:1: E902 No such file or directory (os error 2) docs/physics/images/propagation_direction.png:1:1: E902 No such file or directory (os error 2) docs/physics/intro/images/atom.jpg:1:1: E902 No such file or directory (os error 2) docs/physics/intro/images/emspectrum.jpg:1:1: E902 No such file or directory (os error 2) docs/physics/intro/images/escat.png:1:1: E902 No such file or directory (os error 2) docs/physics/intro/images/excitation.png:1:1: E902 No such file or directory (os error 2) docs/physics/intro/images/ionization.png:1:1: E902 No such file or directory (os error 2) docs/physics/intro/images/levels.png:1:1: E902 No such file or directory (os error 2) docs/physics/intro/images/lines.png:1:1: E902 No such file or directory (os error 2) docs/physics/intro/index.rst:1:1: E902 No such file or directory (os error 2) docs/physics/intro/light_and_matter.rst:1:1: E902 No such file or directory (os error 2) docs/physics/intro/tardis_flowchart.dot:1:1: E902 No such file or directory (os error 2) docs/physics/montecarlo/basicprinciples.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/montecarlo/discretization.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/montecarlo/estimators.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/montecarlo/estimators.rst:8:60: E701 Multiple statements on one line (colon) docs/physics/montecarlo/images/optical_depth_summation.png:1:1: E902 stream did not contain valid UTF-8 docs/physics/montecarlo/images/scatter_downbranch_ma.png:1:1: E902 stream did not contain valid UTF-8 docs/physics/montecarlo/images/spherical_symmetry.png:1:1: E902 stream did not contain valid UTF-8 docs/physics/montecarlo/index.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/montecarlo/initialization.ipynb:1:1: E902 No such file or directory (os error 2) docs/physics/montecarlo/lineinteraction.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/montecarlo/propagation.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/montecarlo/randomsampling.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/montecarlo/sourceintegration.rst:1:1: E999 SyntaxError: Expected a statement docs/physics/montecarlo/virtualpackets.rst:1:1: E999 SyntaxError: Expected a statement docs/physics/nlte/nlte_rates.ipynb:1:1: E902 No such file or directory (os error 2) docs/physics/old_physics/index.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/old_physics/montecarlo_old.rst:1:1: E999 SyntaxError: Expected a statement docs/physics/plasma.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/plasma/construction_simple_plasma.ipynb:1:1: E902 No such file or directory (os error 2) docs/physics/plasma/helium_nlte.rst:1:8: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/physics/plasma/index.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/plasma/lte_plasma.rst:1:5: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/physics/plasma/macroatom.rst:1:7: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/physics/plasma/nebular_plasma.rst:1:9: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/physics/plasma/nlte.rst:1:6: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/physics/plasma/old_plasma.rst:1:1: E999 SyntaxError: Expected a statement docs/physics/plasma/plasma_plots/lte_ionization_balance.py:1:8: F401 [*] `os` imported but unused docs/physics/plasma/plasma_plots/lte_ionization_balance.py:22:31: F821 Undefined name `atom_fname` docs/physics/plasma/plasma_plots/nebular_ionization_balance.py:33:18: F821 Undefined name `plasma` docs/physics/pyplot/plot_mu_in_out_packet.py:1:1: F403 `from pylab import *` used; unable to detect undefined names docs/physics/pyplot/plot_mu_in_out_packet.py:4:15: F405 `mgrid` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:9:1: F405 `xlabel` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:10:1: F405 `ylabel` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:11:1: F405 `imshow` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:11:8: F405 `np` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:12:1: F405 `colorbar` may be undefined, or defined from star imports docs/physics/pyplot/plot_mu_in_out_packet.py:13:1: F405 `show` may be undefined, or defined from star imports docs/physics/setup/index.rst:1:1: E902 No such file or directory (os error 2) docs/physics/setup/model.ipynb:1:1: E902 No such file or directory (os error 2) docs/physics/setup/setup_example.ipynb:1:1: E902 No such file or directory (os error 2) docs/physics/setup/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/physics/spectralsynthesis.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/spectrum/basic.ipynb:1:1: E902 No such file or directory (os error 2) docs/physics/spectrum/formal_integral.rst:1:1: E902 No such file or directory (os error 2) docs/physics/spectrum/index.rst:1:1: E902 No such file or directory (os error 2) docs/physics/spectrum/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/physics/tardisgamma/gammapacketinitialization.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/tardisprocedure.rst:1:1: E999 SyntaxError: Expected an expression docs/physics/update_and_conv/tardis_example.yml:1:1: E902 No such file or directory (os error 2) docs/physics/update_and_conv/update_and_conv.ipynb:1:1: E902 No such file or directory (os error 2) docs/quickstart.ipynb:1:1: E902 No such file or directory (os error 2) docs/quickstart/quickstart.ipynb:cell 11:7:1: F821 Undefined name `figure` docs/quickstart/quickstart.ipynb:cell 11:8:1: F821 Undefined name `plot` docs/quickstart/quickstart.ipynb:cell 11:9:1: F821 Undefined name `plot` docs/quickstart/quickstart.ipynb:cell 11:10:1: F821 Undefined name `plot` docs/quickstart/quickstart.ipynb:cell 11:11:1: F821 Undefined name `xlabel` docs/quickstart/quickstart.ipynb:cell 11:12:1: F821 Undefined name `ylabel` docs/quickstart/quickstart.ipynb:cell 11:13:1: F821 Undefined name `legend` docs/quickstart/quickstart.ipynb:cell 11:14:1: F821 Undefined name `xlim` docs/research/code_comparison/index.rst:1:6: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/research/code_comparison/plasma_compare/plasma_compare.ipynb:cell 2:3:29: F401 [*] `IPython.display.FileLinks` imported but unused docs/research/code_comparison/plasma_compare/plasma_compare.ipynb:cell 13:3:7: F821 Undefined name `figure` docs/research/code_comparison/plasma_compare/plasma_compare.ipynb:cell 13:6:1: F821 Undefined name `xlabel` docs/research/code_comparison/plasma_compare/plasma_compare.ipynb:cell 13:7:1: F821 Undefined name `ylabel` docs/research/code_comparison/plasma_compare/tardis_example.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/research/code_comparison/toy_models/blondin_compare.csvy:1:4: E999 SyntaxError: Expected an expression docs/research/code_comparison/toy_models/blondin_compare_01.csvy:1:4: E999 SyntaxError: Expected an expression docs/research/code_comparison/toy_models/blondin_compare_06.csvy:1:4: E999 SyntaxError: Expected an expression docs/research/code_comparison/toy_models/blondin_model_compare_01.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/research/code_comparison/toy_models/blondin_model_compare_06.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/research/code_comparison/toy_models/reading:1:1: E902 No such file or directory (os error 2) docs/research/index.rst:1:1: E999 SyntaxError: Expected an expression docs/research/research_done_using_TARDIS/research_papers.rst:2:8: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/resources/credits.rst:1:1: E902 No such file or directory (os error 2) docs/resources/credits_template.rst:1:1: E902 No such file or directory (os error 2) docs/resources/research_done_using_TARDIS/ads.ipynb:1:1: E902 No such file or directory (os error 2) docs/resources/zreferences.rst:1:1: E902 No such file or directory (os error 2) docs/roadmap.rst:1:1: E999 SyntaxError: Expected a statement docs/scripts/index.rst:1:1: E999 SyntaxError: Expected an expression docs/tardis.bib:1:1: E999 SyntaxError: Expected a statement docs/team_and_governance/alumni.rst:1:1: E999 SyntaxError: Expected an expression docs/team_and_governance/governance.rst:1:1: E999 SyntaxError: Expected a statement docs/team_and_governance/index.rst:1:1: E999 SyntaxError: Expected an expression docs/team_and_governance/team.rst:1:1: E999 SyntaxError: Expected a statement docs/using/components/atomic/atomic_data.rst:1:1: E999 SyntaxError: Expected a statement docs/using/components/atomic/atomic_data_description.rst:1:1: E999 SyntaxError: Expected a statement docs/using/components/atomic/current_public_table.rst:1:912: E999 SyntaxError: Expected an expression docs/using/components/configuration/config_validator.rst:1:1: E999 SyntaxError: Expected an expression docs/using/components/configuration/configuration.rst:1:1: E999 SyntaxError: Expected a statement docs/using/components/configuration/index.rst:1:1: E999 SyntaxError: Expected an expression docs/using/components/index.rst:1:1: E999 SyntaxError: Expected an expression docs/using/components/models/csy/csvy_test.ipynb:cell 1:2:8: F401 [*] `pytest` imported but unused docs/using/components/models/csy/csvy_test.ipynb:cell 1:4:30: F401 [*] `astropy.units` imported but unused docs/using/components/models/csy/csvy_test.ipynb:cell 1:5:25: F401 [*] `numpy.testing` imported but unused docs/using/components/models/csy/csvy_test.ipynb:cell 3:1:46: F811 Redefinition of unused `test_csvy_finds_csv_first_line` from cell 2, line 7 docs/using/components/models/examples/Custom_Density_And_Boundary_Velocities.ipynb:cell 2:2:29: F401 [*] `matplotlib.pyplot` imported but unused docs/using/components/models/examples/Custom_Density_And_Boundary_Velocities.ipynb:cell 2:3:17: F401 [*] `numpy` imported but unused docs/using/components/models/examples/abund.dat:2:3: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/components/models/examples/abundancecust.rst:1:1: E999 SyntaxError: Expected a statement docs/using/components/models/examples/abundanceuni.rst:1:1: E999 SyntaxError: Expected an expression docs/using/components/models/examples/csvy_full_rad.csvy:1:4: E999 SyntaxError: Expected an expression docs/using/components/models/examples/density.dat:1:3: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/components/models/examples/densitycust.rst:1:1: E999 SyntaxError: Expected a statement docs/using/components/models/examples/densityexp.rst:1:1: E999 SyntaxError: Expected an expression docs/using/components/models/examples/densitypow.rst:1:1: E999 SyntaxError: Expected an expression docs/using/components/models/examples/examples.rst:1:1: E999 SyntaxError: Expected an expression docs/using/components/models/examples/index.rst:1:1: E999 SyntaxError: Expected an expression docs/using/components/models/examples/modelconfig.rst:1:1: E999 SyntaxError: Expected a statement docs/using/components/models/examples/run_simple_example.ipynb:cell 5:5:1: F821 Undefined name `plot` docs/using/components/models/examples/tardis_configv1_abundance_cust_example.yml:1:7: E999 SyntaxError: Expected an expression docs/using/components/models/examples/tardis_configv1_abundance_uniform_example.yml:1:7: E999 SyntaxError: Expected an expression docs/using/components/models/examples/tardis_configv1_density_cust_example.yml:1:7: E999 SyntaxError: Expected an expression docs/using/components/models/examples/tardis_configv1_density_exponential_example.yml:1:7: E999 SyntaxError: Expected an expression docs/using/components/models/examples/tardis_configv1_density_power_law_example.yml:1:7: E999 SyntaxError: Expected an expression docs/using/components/models/examples/tardis_configv1_isotope_abundance_cust_example.yml:1:7: E999 SyntaxError: Expected an expression docs/using/components/models/examples/tardis_example.rst:2:15: E999 SyntaxError: Expected an expression docs/using/components/models/examples/tardis_example.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/components/models/examples/tardis_model_abund.csv:1:7: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/components/models/examples/test_abund.dat:1:3: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/components/models/examples/test_density.txt:1:4: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/components/models/index.rst:1:1: E999 SyntaxError: Expected an expression docs/using/configuration/schemas/csvy_model.yml:1:1: E999 SyntaxError: Got unexpected token $ docs/using/example_data.inc:1:1: E999 SyntaxError: Expected a statement docs/using/gui/index.rst:1:1: E999 SyntaxError: Expected a statement docs/using/gui/using_widgets.rst:1:1: E999 SyntaxError: Expected an expression docs/using/images/LineInfo.png:1:1: E902 stream did not contain valid UTF-8 docs/using/images/OpeningScreen.png:1:1: E902 stream did not contain valid UTF-8 docs/using/images/ShellInfo.png:1:1: E902 stream did not contain valid UTF-8 docs/using/images/line_info_spectrum_modebar.gif:1:1: E902 stream did not contain valid UTF-8 docs/using/images/line_info_spectrum_rangeslider.gif:1:1: E902 stream did not contain valid UTF-8 docs/using/images/line_info_spectrum_selection.gif:1:1: E902 stream did not contain valid UTF-8 docs/using/images/line_info_widget_demo.gif:1:1: E902 stream did not contain valid UTF-8 docs/using/images/shell_info_widget_demo.gif:1:1: E902 stream did not contain valid UTF-8 docs/using/interaction/Custom_TARDIS_Model_Tutorial.ipynb:cell 2:2:29: F401 [*] `matplotlib.pyplot` imported but unused docs/using/interaction/Custom_TARDIS_Model_Tutorial.ipynb:cell 2:3:17: F401 [*] `numpy` imported but unused docs/using/interaction/access.rst:1:1: E999 SyntaxError: Expected an expression docs/using/interaction/access_iterations.rst:1:1: E999 SyntaxError: Expected an expression docs/using/interaction/callback_example.ipynb:cell 2:4:1: E402 Module level import not at top of cell docs/using/interaction/callback_example.ipynb:cell 2:5:1: E402 Module level import not at top of cell docs/using/interaction/callback_example.ipynb:cell 12:3:5: F821 Undefined name `plot` docs/using/interaction/callback_example.ipynb:cell 12:4:1: F821 Undefined name `ylabel` docs/using/interaction/callback_example.ipynb:cell 12:5:1: F821 Undefined name `xlabel` docs/using/interaction/commandline.rst:1:9: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/converters/cmfgen.rst:1:9: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/converters/index.rst:1:1: E999 SyntaxError: Expected a statement docs/using/interaction/converters/mesa.stella.dat:1:1: E999 SyntaxError: Unexpected indentation docs/using/interaction/custom_source.ipynb:cell 2:2:33: F401 [*] `tardis.constants` imported but unused docs/using/interaction/data/abund.dat:1:3: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/data/config_init_trad.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/data/config_no_init_trad.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/data/density.txt:1:4: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/hdf_writer.ipynb:cell 7:3:11: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/index.rst:1:12: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/integrator.ipynb:cell 2:4:31: F401 [*] `tardis.simulation.Simulation` imported but unused docs/using/interaction/integrator.ipynb:cell 8:1:7: F821 Undefined name `figure` docs/using/interaction/integrator.ipynb:cell 8:2:6: F821 Undefined name `plt` docs/using/interaction/integrator.ipynb:cell 14:1:11: F821 Undefined name `np` docs/using/interaction/integrator.ipynb:cell 14:1:58: E703 [*] Statement ends with an unnecessary semicolon docs/using/interaction/integrator.ipynb:cell 14:2:1: F821 Undefined name `figure` docs/using/interaction/integrator.ipynb:cell 14:3:1: F821 Undefined name `plot` docs/using/interaction/isotope_pd_subclass.ipynb:cell 3:25:30: F523 [*] `.format` call has unused arguments at position(s): 0, 1 docs/using/interaction/isotope_pd_subclass.ipynb:cell 3:25:44: F821 Undefined name `nucname` docs/using/interaction/isotope_pd_subclass.ipynb:cell 3:54:16: F821 Undefined name `nucname` docs/using/interaction/isotope_pd_subclass.ipynb:cell 3:54:41: F821 Undefined name `nucname` docs/using/interaction/isotope_pd_subclass.ipynb:cell 3:71:50: F821 Undefined name `nucname` docs/using/interaction/isotope_pd_subclass.ipynb:cell 3:75:17: F821 Undefined name `material` docs/using/interaction/old_gui.rst:1:1: E999 SyntaxError: Expected an expression docs/using/interaction/tardis_example.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/to_hdf.ipynb:cell 9:3:7: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/using/interaction/to_hdf.rst:1:1: E999 SyntaxError: Expected an expression docs/using/interaction/using_formal_integral.rst:1:1: E999 SyntaxError: Expected an expression docs/using/tardis_example.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/yml_files/densitycust/test_config.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/yml_files/densitycust/test_config_ex1.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/yml_files/densitycust/test_config_ex2.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/yml_files/densitycust/test_config_ex3.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons docs/zreferences.rst:1:1: E999 SyntaxError: Expected an expression ez_setup.py:187:9: E722 Do not use bare `except` ez_setup.py:205:9: E722 Do not use bare `except` ez_setup.py:223:9: E722 Do not use bare `except` ez_setup.py:320:20: F821 Undefined name `cmp` licenses/LICENSE.rst:1:1: E902 No such file or directory (os error 2) licenses/README.rst:1:1: E902 No such file or directory (os error 2) scripts/tardis:5:17: F401 [*] `numpy` imported but unused scripts/tardis:97:5: F821 Undefined name `raw_input` setup.cfg:2:1: E999 SyntaxError: Invalid assignment target setup.py:30:1: E402 Module level import not at top of file setup.py:30:8: F401 [*] `ah_bootstrap` imported but unused setup.py:31:1: E402 Module level import not at top of file setup.py:33:1: E402 Module level import not at top of file setup.py:36:1: E402 Module level import not at top of file setup.py:38:1: E402 Module level import not at top of file setup.py:39:1: E402 Module level import not at top of file tardis/__init__.py:13:1: F403 `from ._astropy_init import *` used; unable to detect undefined names tardis/__init__.py:17:25: F401 `tardis.base.run_tardis` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/__init__.py:18:53: F401 `tardis.io.util.yaml_load_config_file` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/_astropy_init.py:125:8: F821 Undefined name `_ASTROPY_SETUP_` tardis/_astropy_init.py:158:17: E722 Do not use bare `except` tardis/analysis.py:4:8: F401 [*] `os` imported but unused tardis/analysis/opacities.py:1:1: E902 No such file or directory (os error 2) tardis/conftest.py:13:5: F403 `from astropy.tests.pytest_plugins import *` used; unable to detect undefined names tardis/conftest.py:24:34: F401 [*] `astropy.tests.helper.enable_deprecations_as_exceptions` imported but unused tardis/conftest.py:173:1: E402 Module level import not at top of file tardis/conftest.py:173:1: F403 `from tardis.tests.fixtures.atom_data import *` used; unable to detect undefined names tardis/conftest.py:216:19: F405 `deepcopy` may be undefined, or defined from star imports tardis/data/atomic_data_repo.yml:3:26: E999 SyntaxError: Expected an expression tardis/energy_input/GXPacket.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/docs/working_gamma_ray_test.ipynb:1:1: E902 No such file or directory (os error 2) tardis/energy_input/energy_source.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/gamma_packet_loop.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/gamma_ray_channel.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/gamma_ray_estimators.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/gamma_ray_grid.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/gamma_ray_interactions.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/gamma_ray_packet_source.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/gamma_ray_transport.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/main_gamma_ray_loop.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/nuclear_energy_source.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/samplers.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/tests/conftest.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/tests/test_energy_source.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/tests/test_gamma_ray_channel.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/tests/test_gamma_ray_grid.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/tests/test_gamma_ray_interactions.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/tests/test_gamma_ray_packet_source.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/tests/test_gamma_ray_transport.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/tests/test_util.py:1:1: E902 No such file or directory (os error 2) tardis/energy_input/util.py:1:1: E902 No such file or directory (os error 2) tardis/grid/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/grid/base.py:1:1: E902 No such file or directory (os error 2) tardis/grid/test.yml:1:1: E902 No such file or directory (os error 2) tardis/grid/tests/data/example.yml:1:1: E902 No such file or directory (os error 2) tardis/grid/tests/data/example_grid.txt:1:1: E902 No such file or directory (os error 2) tardis/grid/tests/test_grid.py:1:1: E902 No such file or directory (os error 2) tardis/gui/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/gui/datahandler.py:4:17: F401 [*] `numpy` imported but unused tardis/gui/datahandler.py:6:28: F401 [*] `matplotlib.pylab` imported but unused tardis/gui/datahandler.py:19:8: F401 [*] `yaml` imported but unused tardis/gui/datahandler.py:21:20: F401 [*] `tardis.run_tardis` imported but unused tardis/gui/datahandler.py:22:32: F401 [*] `tardis.gui.widgets.MatplotlibWidget` imported but unused tardis/gui/datahandler.py:22:50: F401 [*] `tardis.gui.widgets.ModelViewer` imported but unused tardis/gui/datahandler.py:22:63: F401 [*] `tardis.gui.widgets.ShellInfo` imported but unused tardis/gui/datahandler.py:23:32: F401 [*] `tardis.gui.widgets.LineInfo` imported but unused tardis/gui/datahandler.py:23:42: F401 [*] `tardis.gui.widgets.LineInteractionTables` imported but unused tardis/gui/interface.py:6:25: F401 [*] `PySide2.QtCore` imported but unused tardis/gui/tests/test_gui.py:6:25: F401 [*] `astropy.units` imported but unused tardis/gui/widgets.py:17:1: F403 `from matplotlib.figure import *` used; unable to detect undefined names tardis/gui/widgets.py:24:32: F401 [*] `matplotlib.patches.Circle` imported but unused tardis/gui/widgets.py:29:30: F401 [*] `tardis.util` imported but unused tardis/gui/widgets.py:43:23: F405 `Figure` may be undefined, or defined from star imports tardis/gui/widgets.py:229:22: F405 `yaml` may be undefined, or defined from star imports tardis/gui/widgets.py:229:61: F405 `yaml` may be undefined, or defined from star imports tardis/gui/widgets.py:355:24: F405 `TreeModel` may be undefined, or defined from star imports tardis/gui/widgets.py:360:38: F405 `TreeDelegate` may be undefined, or defined from star imports tardis/gui/widgets.py:648:41: F405 `np` may be undefined, or defined from star imports tardis/gui/widgets.py:662:41: F405 `np` may be undefined, or defined from star imports tardis/gui/widgets.py:690:41: F405 `np` may be undefined, or defined from star imports tardis/io/__init__.py:3:5: F401 `tardis.io.model_reader.read_simple_ascii_density` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/__init__.py:4:5: F401 `tardis.io.model_reader.read_simple_ascii_abundances` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/__init__.py:5:5: F401 `tardis.io.model_reader.read_density_file` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/__init__.py:8:39: F401 `tardis.io.config_internal.get_internal_configuration` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/__init__.py:8:67: F401 `tardis.io.config_internal.get_data_dir` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/atom_data/__init__.py:1:38: F401 `tardis.io.atom_data.base.AtomData` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/atom_data/__init__.py:2:51: F401 `tardis.io.atom_data.atom_web_download.download_atom_data` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/atom_data/collision_data.py:1:1: E902 No such file or directory (os error 2) tardis/io/atom_data/macro_atom_data.py:1:1: E902 No such file or directory (os error 2) tardis/io/atom_data/nlte_data.py:1:1: E902 No such file or directory (os error 2) tardis/io/atom_data/util.py:7:5: F401 [*] `tardis.io.atom_data.atom_web_download.download_atom_data` imported but unused tardis/io/config_internal.py:2:1: E401 [*] Multiple imports on one line tardis/io/configuration/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/config_internal.py:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/schemas/csvy_model.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/schemas/debug.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/schemas/model.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/schemas/montecarlo.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/tests/data/tardis_configv1_density_exponential_nebular.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/tests/data/tardis_configv1_density_exponential_nebular_Ni_only.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/tests/data/tardis_configv1_density_exponential_nebular_multi_isotope.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/tests/data/tardis_configv1_nlte.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/tests/data/tardis_configv1_verysimple_logger.yml:1:1: E902 No such file or directory (os error 2) tardis/io/configuration/tests/test_config_reader.py:1:1: E902 No such file or directory (os error 2) tardis/io/decay.py:33:13: F402 Import `material` from line 2 shadowed by loop variable tardis/io/logger/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/io/logger/logger.py:1:1: E902 No such file or directory (os error 2) tardis/io/logger/tests/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/io/logger/tests/test_logging.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/parse_atom_data.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/parse_composition_configuration.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/parse_density_configuration.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/parse_geometry_configuration.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/parse_mass_fraction_configuration.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/parse_packet_source_configuration.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/parse_radiation_field_configuration.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/parse_simulation_state.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/arepo.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/artis.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/base.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/cmfgen.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/cmfgen_deprecated.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/generic_readers.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/stella.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/data/arepo_cone_reference_model.csvy:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/data/arepo_full_reference_model.csvy:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/data/mesa.stella.dat:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/data/non_uniform_isotope_abundance.dat:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/data/tardis_configv1_isotope_iabund.yml:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/test_arepo_parser.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/test_ascii_readers.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/test_cmfgen_reader.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/tests/test_stella_reader.py:1:1: E902 No such file or directory (os error 2) tardis/io/model/readers/util.py:1:1: E902 No such file or directory (os error 2) tardis/io/model_reader.py:5:31: F401 [*] `numpy.genfromtxt` imported but unused tardis/io/model_reader.py:15:1: E402 Module level import not at top of file tardis/io/model_reader.py:251:25: F841 Local variable `fh` is assigned to but never used tardis/io/model_reader.py:254:17: F841 Local variable `no_of_shells` is assigned to but never used tardis/io/parsers/__init__.py:2:5: F401 `tardis.io.parsers.blondin_toymodel.read_blondin_toymodel` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/parsers/__init__.py:3:5: F401 `tardis.io.parsers.blondin_toymodel.convert_blondin_toymodel` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/io/parsers/csvy.py:39:44: F841 [*] Local variable `e` is assigned to but never used tardis/io/parsers/csvy.py:67:17: F841 Local variable `yaml_end_ind` is assigned to but never used tardis/io/parsers/stella.py:3:30: F401 [*] `astropy.units` imported but unused tardis/io/parsers/stella.py:4:17: F401 [*] `numpy` imported but unused tardis/io/schemas/base.yml:1:1: E999 SyntaxError: Got unexpected token $ tardis/io/schemas/csvy_model.yml:1:1: E999 SyntaxError: Got unexpected token $ tardis/io/schemas/model.yml:1:1: E999 SyntaxError: Got unexpected token $ tardis/io/schemas/montecarlo.yml:1:1: E999 SyntaxError: Got unexpected token $ tardis/io/schemas/plasma.yml:1:1: E999 SyntaxError: Got unexpected token $ tardis/io/schemas/spectrum.yml:1:1: E999 SyntaxError: Got unexpected token $ tardis/io/schemas/supernova.yml:1:1: E999 SyntaxError: Got unexpected token $ tardis/io/tests/data/abund.dat:2:3: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/artis_abundances.dat:1:1: E999 SyntaxError: Unexpected indentation tardis/io/tests/data/artis_model.dat:1:1: E999 SyntaxError: Unexpected indentation tardis/io/tests/data/cmfgen_model.csv:1:11: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/conf_def.yml:1:12: E999 SyntaxError: Expected an expression tardis/io/tests/data/conf_tes.yml:1:12: E999 SyntaxError: Expected an expression tardis/io/tests/data/csv_composition.csv:1:7: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/csvy_full.csvy:1:4: E999 SyntaxError: Expected an expression tardis/io/tests/data/csvy_missing.csvy:1:4: E999 SyntaxError: Expected an expression tardis/io/tests/data/csvy_nocsv.csvy:1:4: E999 SyntaxError: Expected an expression tardis/io/tests/data/csvy_test_config.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/density.dat:1:3: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/invalid_artis_model.dat:1:1: E999 SyntaxError: Unexpected indentation tardis/io/tests/data/paper1_tardis_configv1.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_artis_density.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_artis_density_v_slice.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_ascii_density.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_ascii_density_abund.yml:4:4: E999 SyntaxError: Expected an expression tardis/io/tests/data/tardis_configv1_ascii_density_uniabund.yml:4:4: E999 SyntaxError: Expected an expression tardis/io/tests/data/tardis_configv1_density_exponential_test.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_density_power_law_test.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_isotope_uniabund.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_tardis_model_format.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_uniform_density.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_configv1_verysimple.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/data/tardis_simple_ascii_density_test.dat:1:3: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/io/tests/test_HDFWriter.py:1:8: F401 [*] `os` imported but unused tardis/io/tests/test_HDFWriter.py:8:34: F401 [*] `astropy.tests.helper.assert_quantity_allclose` imported but unused tardis/io/tests/test_HDFWriter.py:9:27: F401 [*] `numpy.testing.assert_almost_equal` imported but unused tardis/io/tests/test_ascii_readers.py:9:17: F401 [*] `numpy` imported but unused tardis/io/tests/test_csvy_reader.py:4:38: F401 [*] `jsonschema.exceptions` imported but unused tardis/io/tests/test_csvy_reader.py:7:30: F401 [*] `astropy.units` imported but unused tardis/io/tests/test_csvy_reader.py:51:9: F841 Local variable `vy` is assigned to but never used tardis/io/util.py:167:34: F821 Undefined name `basestring` tardis/model/__init__.py:1:1: F403 `from tardis.model.base import *` used; unable to detect undefined names tardis/model/conftest.py:1:1: E902 No such file or directory (os error 2) tardis/model/geometry/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/model/geometry/radial1d.py:1:1: E902 No such file or directory (os error 2) tardis/model/geometry/tests/test_radial1d.py:1:1: E902 No such file or directory (os error 2) tardis/model/matter/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/model/matter/composition.py:1:1: E902 No such file or directory (os error 2) tardis/model/tests/data/branch85_csvy.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/branch85_old_config.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/csvy_model_to_test_abundances.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/exponential_csvy.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/exponential_old_config.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/model_full_csvy.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/model_full_old_config.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/powerlaw_csvy.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/powerlaw_old_config.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/radiative_csvy.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/radiative_old_config.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/uniform_csvy.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/data/uniform_old_config.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/model/tests/test_csvy_model.py:6:30: F401 [*] `astropy.units` imported but unused tardis/montecarlo/__init__.py:1:1: F403 `from tardis.montecarlo.base import *` used; unable to detect undefined names tardis/montecarlo/base.py:1:8: F401 [*] `os` imported but unused tardis/montecarlo/formal_integral.py:9:8: F401 [*] `pdb` imported but unused tardis/montecarlo/formal_integral.py:14:5: F401 [*] `tardis.montecarlo.montecarlo_numba.numba_interface.numba_plasma_initialize` imported but unused tardis/montecarlo/formal_integral.py:77:16: E713 [*] Test for membership should be `not in` tardis/montecarlo/formal_integral.py:316:9: F841 Local variable `finished_nus` is assigned to but never used tardis/montecarlo/montecarlo.pyx:11:9: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/montecarlo/montecarlo_configuration.py:1:33: F401 [*] `tardis.constants` imported but unused tardis/montecarlo/montecarlo_numba/__init__.py:6:1: E402 Module level import not at top of file tardis/montecarlo/montecarlo_numba/__init__.py:6:57: F401 `tardis.montecarlo.montecarlo_numba.r_packet.RPacket` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/montecarlo/montecarlo_numba/__init__.py:7:1: E402 Module level import not at top of file tardis/montecarlo/montecarlo_numba/__init__.py:7:53: F401 `tardis.montecarlo.montecarlo_numba.base.montecarlo_radial1d` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/montecarlo/montecarlo_numba/__init__.py:8:1: E402 Module level import not at top of file tardis/montecarlo/montecarlo_numba/__init__.py:8:64: F401 `tardis.montecarlo.montecarlo_numba.numba_interface.PacketCollection` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/montecarlo/montecarlo_numba/base.py:1:33: F401 [*] `numba.jit` imported but unused tardis/montecarlo/montecarlo_numba/base.py:2:8: F401 [*] `logging` imported but unused tardis/montecarlo/montecarlo_numba/base.py:8:5: F401 [*] `tardis.montecarlo.montecarlo_numba.r_packet.MonteCarloException` imported but unused tardis/montecarlo/montecarlo_numba/base.py:16:5: F401 [*] `tardis.montecarlo.montecarlo_numba.numba_interface.configuration_initialize` imported but unused tardis/montecarlo/montecarlo_numba/base.py:177:9: F841 Local variable `loop` is assigned to but never used tardis/montecarlo/montecarlo_numba/montecarlo_logger.py:2:23: F401 [*] `functools.wraps` imported but unused tardis/montecarlo/montecarlo_numba/numba_interface.py:3:35: F401 [*] `numba.boolean` imported but unused tardis/montecarlo/montecarlo_numba/r_packet.py:16:5: F401 [*] `tardis.montecarlo.montecarlo_numba.numba_config.SIGMA_THOMSON` imported but unused tardis/montecarlo/montecarlo_numba/r_packet.py:394:9: F841 Local variable `nu_line_last_interaction` is assigned to but never used tardis/montecarlo/montecarlo_numba/single_packet_loop.py:2:17: F401 [*] `numpy` imported but unused tardis/montecarlo/montecarlo_numba/single_packet_loop.py:11:5: F401 [*] `tardis.montecarlo.montecarlo_numba.r_packet.MonteCarloException` imported but unused tardis/montecarlo/montecarlo_numba/single_packet_loop.py:18:5: F401 [*] `tardis.montecarlo.montecarlo_numba.numba_interface.LineInteractionType` imported but unused tardis/montecarlo/montecarlo_numba/single_packet_loop.py:30:1: E402 Module level import not at top of file tardis/montecarlo/montecarlo_numba/single_packet_loop.py:30:66: F401 [*] `tardis.montecarlo.montecarlo_numba.montecarlo_logger.log_decorator` imported but unused tardis/montecarlo/montecarlo_numba/single_packet_loop.py:31:1: E402 Module level import not at top of file tardis/montecarlo/montecarlo_numba/tests/test_base.py:12:51: F401 [*] `tardis.montecarlo.montecarlo_numba.base` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_base.py:22:5: F401 [*] `tardis.montecarlo.montecarlo_numba.numba_interface.configuration_initialize` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_macro_atom.py:3:17: F401 [*] `numpy` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_packet.py:1:8: F401 [*] `os` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_packet.py:4:18: F401 [*] `pandas` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_packet.py:5:45: F401 [*] `tardis.montecarlo.formal_integral` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_packet.py:7:54: F401 [*] `tardis.montecarlo.montecarlo_configuration` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_packet.py:10:64: F401 [*] `tardis.montecarlo.montecarlo_numba.numba_interface.Estimators` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_packet.py:12:48: F401 [*] `tardis.montecarlo.montecarlo_numba.macro_atom` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_packet.py:17:1: E402 Module level import not at top of file tardis/montecarlo/montecarlo_numba/tests/test_packet.py:18:5: F401 [*] `numpy.testing.assert_equal` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_packet.py:20:5: F401 [*] `numpy.testing.assert_array_equal` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:1:8: F401 [*] `os` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:4:18: F401 [*] `pandas` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:5:45: F401 [*] `tardis.montecarlo.formal_integral` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:8:54: F401 [*] `tardis.montecarlo.montecarlo_configuration` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:9:62: F401 [*] `tardis.montecarlo.montecarlo_numba.numba_interface` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:11:64: F401 [*] `tardis.montecarlo.montecarlo_numba.numba_interface.Estimators` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:12:48: F401 [*] `tardis.montecarlo.montecarlo_numba.macro_atom` imported but unused tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:16:1: E402 Module level import not at top of file tardis/montecarlo/montecarlo_numba/tests/test_vpacket.py:87:12: E712 Avoid equality comparisons to `False`; use `if not v_packet.is_close_line:` for false checks tardis/montecarlo/montecarlo_numba/vpacket.py:2:25: F401 [*] `numba.gdb` imported but unused tardis/montecarlo/packet_source.py:100:9: E741 Ambiguous variable name: `l` tardis/montecarlo/packet_source.py:100:9: F841 Local variable `l` is assigned to but never used tardis/montecarlo/packet_source.py:101:9: F841 Local variable `xis_prod` is assigned to but never used tardis/montecarlo/src/abbrev.h:6:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/abbrev.h:7:22: E702 Multiple statements on one line (semicolon) tardis/montecarlo/src/abbrev.h:16:23: E702 Multiple statements on one line (semicolon) tardis/montecarlo/src/cmontecarlo.c:16:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/cmontecarlo.h:16:9: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/montecarlo/src/cmontecarlo.h:18:81: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:22:59: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:24:48: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:27:71: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:31:69: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:35:61: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:37:88: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:39:96: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:42:81: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:45:90: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:55:67: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/cmontecarlo.h:65:71: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/integrator.c:27:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/integrator.h:7:27: E999 SyntaxError: Expected ',', found name tardis/montecarlo/src/integrator.h:7:63: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/integrator.h:10:91: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/integrator.h:13:57: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/integrator.h:17:149: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/io.h:10:8: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/montecarlo/src/omp_helper.h:4:5: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/montecarlo/src/randomkit/LICENSE:1:15: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/montecarlo/src/randomkit/randomkit.h:1:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/randomkit/rk_isaac.c:1:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/randomkit/rk_isaac.h:1:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/randomkit/rk_mt.c:1:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/randomkit/rk_mt.h:1:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/randomkit/rk_primitive.c:1:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/randomkit/rk_primitive.h:1:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/randomkit/rk_sobol.c:1:1: E902 stream did not contain valid UTF-8 tardis/montecarlo/src/randomkit/rk_sobol.h:1:1: E902 stream did not contain valid UTF-8 tardis/montecarlo/src/rpacket.c:6:8: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/montecarlo/src/rpacket.c:7:71: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/rpacket.h:17:1: E999 SyntaxError: Expected a statement tardis/montecarlo/src/rpacket.h:64:12: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/rpacket.h:256:101: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/status.h:4:9: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/montecarlo/src/status.h:9:17: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/status.h:16:19: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/status.h:22:27: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/status.h:30:16: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/status.h:36:23: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/storage.h:8:9: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/montecarlo/src/storage.h:13:21: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/src/storage.h:100:18: E703 [*] Statement ends with an unnecessary semicolon tardis/montecarlo/tests/conftest.py:1:8: F401 [*] `os` imported but unused tardis/montecarlo/tests/conftest.py:7:5: F401 [*] `ctypes.CDLL` imported but unused tardis/montecarlo/tests/data/continuum_compare_data.hdf:1:1: E902 stream did not contain valid UTF-8 tardis/montecarlo/tests/test_base.py:3:17: F401 [*] `numpy` imported but unused tardis/montecarlo/tests/test_base.py:5:30: F401 [*] `astropy.units` imported but unused tardis/montecarlo/tests/test_montecarlo.py:63:1: E402 Module level import not at top of file tardis/montecarlo/tests/test_montecarlo.py:64:5: F401 [*] `ctypes.CDLL` imported but unused tardis/montecarlo/tests/test_montecarlo.py:66:5: F401 [*] `ctypes.c_uint` imported but unused tardis/montecarlo/tests/test_montecarlo.py:70:5: F401 [*] `ctypes.c_void_p` imported but unused tardis/montecarlo/tests/test_montecarlo.py:71:5: F401 [*] `ctypes.cast` imported but unused tardis/montecarlo/tests/test_montecarlo.py:77:1: E402 Module level import not at top of file tardis/montecarlo/tests/test_montecarlo.py:80:5: F401 [*] `numpy.testing.assert_array_equal` imported but unused tardis/montecarlo/tests/test_montecarlo.py:84:1: E402 Module level import not at top of file tardis/montecarlo/tests/test_montecarlo.py:85:1: E402 Module level import not at top of file tardis/montecarlo/tests/test_montecarlo.py:92:5: F401 [*] `tardis.montecarlo.struct.TARDIS_ERROR_COMOV_NU_LESS_THAN_NU_LINE` imported but unused tardis/montecarlo/tests/test_montecarlo.py:93:5: F401 [*] `tardis.montecarlo.struct.TARDIS_PACKET_STATUS_IN_PROCESS` imported but unused tardis/montecarlo/tests/test_montecarlo.py:94:5: F401 [*] `tardis.montecarlo.struct.TARDIS_PACKET_STATUS_EMITTED` imported but unused tardis/montecarlo/tests/test_montecarlo.py:95:5: F401 [*] `tardis.montecarlo.struct.TARDIS_PACKET_STATUS_REABSORBED` imported but unused tardis/montecarlo/tests/test_montecarlo.py:96:5: F401 [*] `tardis.montecarlo.struct.CONTINUUM_OFF` imported but unused tardis/montecarlo/tests/test_montecarlo.py:97:5: F401 [*] `tardis.montecarlo.struct.CONTINUUM_ON` imported but unused tardis/montecarlo/tests/test_montecarlo.py:99:5: F401 [*] `tardis.montecarlo.struct.BoundFreeTreatment` imported but unused tardis/montecarlo/tests/test_montecarlo.py:428:9: F841 Local variable `obtained` is assigned to but never used tardis/montecarlo/tests/test_montecarlo.py:462:9: F841 Local variable `obtained` is assigned to but never used tardis/montecarlo/tests/test_montecarlo.py:524:5: F811 Redefinition of unused `test_get_random_mu_different_output` from line 515 tardis/montecarlo/tests/test_montecarlo.py:544:9: F841 Local variable `obtained` is assigned to but never used tardis/montecarlo/tests/test_montecarlo.py:946:5: F841 Local variable `rkstate` is assigned to but never used tardis/montecarlo/tests/test_montecarlo.py:948:35: F821 Undefined name `numba_plasma` tardis/opacities/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/continuum/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/continuum/bound_free.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/continuum/continuum_state.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/macro_atom/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/macro_atom/base.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/macro_atom/continuum_processes/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/macro_atom/continuum_processes/collisional_ion_trans_prob.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/macro_atom/macroatom_solver.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/macro_atom/macroatom_state.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/macro_atom/transition_probabilities.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/opacities.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/opacity_solver.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/opacity_state.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/tau_sobolev.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/tests/conftest.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/tests/test_opacity_solver.py:1:1: E902 No such file or directory (os error 2) tardis/opacities/tests/test_opacity_state_numba.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/__init__.py:1:32: F401 `tardis.plasma.base.BasePlasma` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/plasma/assembly/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/assembly/base.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/assembly/legacy_assembly.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/base.py:1:8: F401 [*] `os` imported but unused tardis/plasma/base.py:8:18: F401 [*] `pandas` imported but unused tardis/plasma/base.py:11:1: F403 `from tardis.plasma.properties.base import *` used; unable to detect undefined names tardis/plasma/base.py:102:17: E722 Do not use bare `except` tardis/plasma/base.py:135:44: F405 `PreviousIterationProperty` may be undefined, or defined from star imports tardis/plasma/base.py:144:46: F405 `Input` may be undefined, or defined from star imports tardis/plasma/base.py:230:20: F401 [*] `pygraphviz` imported but unused tardis/plasma/base.py:231:9: E722 Do not use bare `except` tardis/plasma/base.py:254:9: E722 Do not use bare `except` tardis/plasma/base.py:283:35: F405 `HiddenPlasmaProperty` may be undefined, or defined from star imports tardis/plasma/base.py:301:29: E722 Do not use bare `except` tardis/plasma/properties/__init__.py:1:1: F403 `from tardis.plasma.properties.atomic import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:2:1: F403 `from tardis.plasma.properties.general import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:3:1: F403 `from tardis.plasma.properties.ion_population import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:4:1: F403 `from tardis.plasma.properties.level_population import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:5:1: F403 `from tardis.plasma.properties.partition_function import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:6:1: F403 `from tardis.plasma.properties.plasma_input import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:7:1: F403 `from tardis.plasma.properties.radiative_properties import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:8:1: F403 `from tardis.plasma.properties.nlte import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:9:1: F403 `from tardis.plasma.properties.j_blues import *` used; unable to detect undefined names tardis/plasma/properties/__init__.py:10:1: F403 `from tardis.plasma.properties.continuum_processes import *` used; unable to detect undefined names tardis/plasma/properties/base.py:21:1: E402 Module level import not at top of file tardis/plasma/properties/base.py:21:8: F401 [*] `os` imported but unused tardis/plasma/properties/base.py:56:9: F841 Local variable `outputs` is assigned to but never used tardis/plasma/properties/continuum_processes/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/properties/continuum_processes/fast_array_util.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/properties/continuum_processes/photo_ion_rate_coeff.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/properties/continuum_processes/rates.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/properties/continuum_processes/recomb_rate_coeff.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/properties/general.py:4:18: F401 [*] `pandas` imported but unused tardis/plasma/properties/helium_nlte.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/properties/ion_population.py:7:19: F401 [*] `numexpr` imported but unused tardis/plasma/properties/ion_population.py:176:17: F523 [*] `.format` call has unused arguments at position(s): 2 tardis/plasma/properties/nlte.py:216:21: E722 Do not use bare `except` tardis/plasma/properties/nlte.py:227:17: F841 Local variable `helium_j_blues` is assigned to but never used tardis/plasma/properties/nlte.py:292:62: F821 Undefined name `s1` tardis/plasma/properties/nlte_excitation_data.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/properties/nlte_rate_equation_solver.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/properties/plasma_input.py:1:62: F401 [*] `tardis.plasma.properties.base.DataFrameInput` imported but unused tardis/plasma/properties/property_collections.py:1:1: F403 `from tardis.plasma.properties import *` used; unable to detect undefined names tardis/plasma/properties/property_collections.py:10:9: F405 `TRadiative` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:11:9: F405 `Abundance` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:12:9: F405 `Density` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:13:9: F405 `TimeExplosion` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:14:9: F405 `AtomicData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:15:9: F405 `DilutionFactor` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:16:9: F405 `LinkTRadTElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:17:9: F405 `HeliumTreatment` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:18:9: F405 `ContinuumInteractionSpecies` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:23:9: F405 `BetaRadiation` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:24:9: F405 `Levels` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:25:9: F405 `Lines` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:26:9: F405 `AtomicMass` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:27:9: F405 `PartitionFunction` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:28:9: F405 `GElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:29:9: F405 `IonizationData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:30:9: F405 `NumberDensity` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:31:9: F405 `LinesLowerLevelIndex` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:32:9: F405 `LinesUpperLevelIndex` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:33:9: F405 `TauSobolev` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:34:9: F405 `StimulatedEmissionFactor` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:35:9: F405 `SelectedAtoms` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:36:9: F405 `ElectronTemperature` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:39:55: F405 `PhiSahaLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:40:55: F405 `LevelBoltzmannFactorLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:42:6: F405 `BetaSobolev` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:42:19: F405 `TransitionProbabilities` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:45:6: F405 `PhiSahaNebular` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:45:22: F405 `ZetaData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:45:32: F405 `BetaElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:45:46: F405 `RadiationFieldCorrection` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:48:6: F405 `LevelBoltzmannFactorDiluteLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:50:49: F405 `LevelBoltzmannFactorNoNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:53:9: F405 `LevelBoltzmannFactorNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:54:9: F405 `NLTEData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:55:9: F405 `PreviousElectronDensities` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:56:9: F405 `PreviousBetaSobolev` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:57:9: F405 `BetaSobolev` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:62:9: F405 `HeliumNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:63:9: F405 `RadiationFieldCorrection` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:64:9: F405 `ZetaData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:65:9: F405 `BetaElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:66:9: F405 `LevelNumberDensityHeNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:67:9: F405 `IonNumberDensityHeNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:71:6: F405 `LevelNumberDensity` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:71:26: F405 `IonNumberDensity` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:74:6: F405 `HeliumNumericalNLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:77:6: F405 `JBluesEstimator` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:77:23: F405 `RInner` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:77:31: F405 `TInner` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:77:39: F405 `Volume` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:80:6: F405 `JBluesDetailed` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:80:22: F405 `JBluesNormFactor` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:80:40: F405 `LuminosityInner` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:80:57: F405 `TimeSimulation` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:84:9: F405 `PhotoIonizationData` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:85:9: F405 `SpontRecombRateCoeff` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:86:9: F405 `ThermalLevelBoltzmannFactorLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:87:9: F405 `ThermalLTEPartitionFunction` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:88:9: F405 `BetaElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:89:9: F405 `ThermalGElectron` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:90:9: F405 `ThermalPhiSahaLTE` may be undefined, or defined from star imports tardis/plasma/properties/property_collections.py:91:9: F405 `SahaFactor` may be undefined, or defined from star imports tardis/plasma/properties/radiative_properties.py:75:9: F841 Local variable `n_upper` is assigned to but never used tardis/plasma/properties/radiative_properties.py:78:9: F841 Local variable `g_lower` is assigned to but never used tardis/plasma/properties/radiative_properties.py:79:9: F841 Local variable `g_upper` is assigned to but never used tardis/plasma/properties/radiative_properties.py:342:13: F841 Local variable `block` is assigned to but never used tardis/plasma/properties/radiative_properties.py:351:9: E722 Do not use bare `except` tardis/plasma/properties/rate_matrix_index.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/radiation_field/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/radiation_field/planck_rad_field.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/setup_package.py:2:24: F401 [*] `setuptools.Extension` imported but unused tardis/plasma/setup_package.py:4:17: F401 [*] `numpy` imported but unused tardis/plasma/setup_package.py:40:5: F841 Local variable `sources` is assigned to but never used tardis/plasma/standard_plasmas.py:198:29: F821 Undefined name `IonNumberDensityHeNLTE` tardis/plasma/tests/data/config_init_trad.yml:2:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/plasma/tests/data/plasma_base_test_config.yml:1:26: E999 SyntaxError: Simple statements must be separated by newlines or semicolons tardis/plasma/tests/test_nlte_excitation.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/tests/test_nlte_solver.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/tests/test_plasma_continuum.py:1:1: E902 No such file or directory (os error 2) tardis/plasma/tests/test_plasma_vboundary.py:7:38: F401 [*] `tardis.io.atom_data.base.AtomData` imported but unused tardis/plasma/tests/test_plasma_vboundary.py:50:5: F841 Local variable `simulation` is assigned to but never used tardis/radiation_field/base.py:1:1: E902 No such file or directory (os error 2) tardis/scripts/cmfgen2tardis.py:2:8: F401 [*] `sys` imported but unused tardis/scripts/debug/run_numba_single.py:2:17: F401 [*] `numpy` imported but unused tardis/scripts/debug/run_numba_single.py:3:53: F401 [*] `tardis.montecarlo.montecarlo_numba.base.montecarlo_main_loop` imported but unused tardis/scripts/debug/run_numba_single.py:4:8: F401 [*] `os` imported but unused tardis/scripts/debug/run_numba_single.py:5:8: F401 [*] `numba` imported but unused tardis/scripts/debug/tardis_example_single.yml:2:7: E999 SyntaxError: Expected an expression tardis/scripts/tardis:1:1: E902 No such file or directory (os error 2) tardis/simulation/__init__.py:1:36: F401 `tardis.simulation.base.Simulation` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/simulation/base.py:13:59: F401 [*] `tardis.montecarlo.montecarlo_configuration` imported but unused tardis/simulation/convergence.py:1:1: E902 No such file or directory (os error 2) tardis/simulation/setup_package.py:2:24: F401 [*] `setuptools.Extension` imported but unused tardis/simulation/setup_package.py:3:47: F401 [*] `astropy_helpers.distutils_helpers.get_distutils_option` imported but unused tardis/simulation/setup_package.py:4:17: F401 [*] `numpy` imported but unused tardis/simulation/tests/test_convergence.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/base.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/formal_integral.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/formal_integral_cuda.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/luminosity.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/tests/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/tests/conftest.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/tests/test_cuda_formal_integral.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/tests/test_luminosity.py:1:1: E902 No such file or directory (os error 2) tardis/spectrum/tests/test_spectrum_solver.py:1:1: E902 No such file or directory (os error 2) tardis/tests/fixtures/regression_data.py:1:1: E902 No such file or directory (os error 2) tardis/tests/integration_tests/report.py:39:41: F401 `pytest_html.__name__` imported but unused; consider using `importlib.util.find_spec` to test for availability tardis/tests/integration_tests/test_integration.py:208:37: E741 Ambiguous variable name: `l` tardis/tests/setup_package.py:3:9: F821 Undefined name `_ASTROPY_PACKAGE_NAME_` tardis/tests/test_util.py:3:25: F401 [*] `numpy.testing` imported but unused tardis/tests/test_util.py:15:5: F401 [*] `tardis.util.base.create_synpp_yaml` imported but unused tardis/transport/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/transport/frame_transformations.py:1:1: E902 No such file or directory (os error 2) tardis/transport/geometry/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/transport/geometry/calculate_distances.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/base.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/configuration/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/configuration/base.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/configuration/montecarlo_globals.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/conftest.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/base.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/continuum_radfield_properties.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/mc_rad_field_solver.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/radfield_estimator_calcs.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/radfield_mc_estimators.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/tests/conftest.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/tests/test_continuum_property_solver.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/estimators/util.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/interaction.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/montecarlo_main_loop.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/montecarlo_transport_state.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/nonhomologous_grid.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/numba_interface.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/packet_collections.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/packet_source.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/packet_trackers.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/r_packet.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/r_packet_transport.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/single_packet_loop.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/conftest.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_base.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_continuum.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_macro_atom.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_montecarlo.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_montecarlo_main_loop.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_nonhomologous.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_opacities.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_packet_source.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_rpacket_last_interaction_tracker.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_rpacket_tracker.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_tracker_utils.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_weighted_packet_source.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/tests/test_weighted_packet_source_integration.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/utils.py:1:1: E902 No such file or directory (os error 2) tardis/transport/montecarlo/weighted_packet_source.py:1:1: E902 No such file or directory (os error 2) tardis/transport/tests/test_doppler_factor.py:1:1: E902 No such file or directory (os error 2) tardis/util/base.py:307:5: F841 Local variable `beta_rad` is assigned to but never used tardis/util/base.py:308:5: F841 Local variable `coefficient` is assigned to but never used tardis/visualization/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/convergence_plot.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/liv_plot.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/rpacket_plot.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/sdec_plot.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/tests/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/tests/data/observed_spectrum_test_data.dat:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/tests/test_convergence_plot.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/tests/test_liv_plot.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/tests/test_rpacket_plot.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/tools/tests/test_sdec_plot.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/widgets/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/widgets/custom_abundance.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/widgets/grotrian.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/widgets/grotrian_mockup.ipynb:1:1: E902 No such file or directory (os error 2) tardis/visualization/widgets/tests/__init__.py:1:1: E902 No such file or directory (os error 2) tardis/visualization/widgets/tests/test_custom_abundance.py:1:1: E902 No such file or directory (os error 2) tardis/widgets/__init__.py:2:5: F401 `tardis.widgets.shell_info.shell_info_from_simulation` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/widgets/__init__.py:3:5: F401 `tardis.widgets.shell_info.shell_info_from_hdf` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/widgets/__init__.py:5:38: F401 `tardis.widgets.line_info.LineInfoWidget` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/widgets/__init__.py:6:40: F401 `tardis.widgets.kromer_plot.KromerPlotter` imported but unused; consider removing, adding to `__all__`, or using a redundant alias tardis/widgets/line_info.py:2:8: F401 [*] `re` imported but unused tardis/widgets/line_info.py:7:8: F401 [*] `qgrid` imported but unused tardis/widgets/line_info.py:295:21: E712 Avoid equality comparisons to `False`; use `if not ...:` for false checks tardis/widgets/shell_info.py:1:25: F401 [*] `tardis.base.run_tardis` imported but unused tardis/widgets/shell_info.py:2:38: F401 [*] `tardis.io.atom_data.util.download_atom_data` imported but unused tardis/widgets/shell_info.py:7:31: F401 [*] `tardis.simulation.Simulation` imported but unused tardis/widgets/shell_info.py:11:17: F401 [*] `numpy` imported but unused tardis/widgets/tests/test_line_info.py:42:20: E712 Avoid equality comparisons to `False`; use `if not species_interactions_df.all(axis=None):` for false checks tardis/widgets/tests/test_line_info.py:65:12: E712 Avoid equality comparisons to `False`; use `if not species_interactions_df.all(axis=None):` for false checks tardis/widgets/tests/test_line_info.py:88:20: E712 Avoid equality comparisons to `False`; use `if not last_line_counts_df.all(axis=None):` for false checks tardis/widgets/tests/test_line_info.py:285:16: E712 Avoid equality comparisons to `False`; use `if not bool(selected_species):` for false checks tardis/widgets/tests/test_line_info.py:331:12: E712 Avoid equality comparisons to `False`; use `if not ...:` for false checks tardis_env3.yml:3:10: E999 SyntaxError: Expected an expression tox.ini:1:1: E902 No such file or directory (os error 2) toymodel.ipynb:1:1: E902 No such file or directory (os error 2) Found 1001 errors. [*] 149 fixable with the `--fix` option (30 hidden fixes can be enabled with the `--unsafe-fixes` option). ```