I've just tried to improve the README to make peakachu more accessible to users. Please review it. For installation, I removed your "conda" option, because in my test, it will install hundreds of irrelevant packages. I also found the output information of peakachu train -h, peakachu score_chromosome -h you pasted are outdated, and mistakes of several example code.
For code, I modified the peakachu depth subcommand and several command-line help information to make it more straightforward. Can you upload the new version to PyPI.
Hi Tarik,
I've just tried to improve the README to make peakachu more accessible to users. Please review it. For installation, I removed your "conda" option, because in my test, it will install hundreds of irrelevant packages. I also found the output information of
peakachu train -h,peakachu score_chromosome -hyou pasted are outdated, and mistakes of several example code.For code, I modified the
peakachu depthsubcommand and several command-line help information to make it more straightforward. Can you upload the new version to PyPI.Thanks!