The predicted location information of the loop file exceeds the size of the chromosomes of the genome

tariks / peakachu

Genome-wide contact analysis using sklearn

MIT License

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Closed wbszhu closed 2 years ago

wbszhu commented 3 years ago

Hi,@XiaoTaoWang I have some trouble using peakachu: the predicted location information of the loop file exceeds the size of the chromosomes of the genome. Please check details with this note https://98c96260.wiz06.com/wapp/pages/view/share/s/2oOm9w0OKN7H2rKMlH1jJYHg2zwMvw3Suk9K28lqIb26pO9q

Thanks for your reply. LuZhang.

XiaoTaoWang commented 3 years ago

Hi, because your Hi-C matrix is at 5kb, you should also set "-r/--resolution" to "5000" when you run "peakachu score_chromosome" and "peakachu pool".

wbszhu commented 3 years ago

Thanks a lot.