Closed WangJiuming closed 1 year ago
Hi, sorry for the late response. I think the error occurred due to a discrepancy in genomic coordinates between the contact matrix and your training data. It seems that the coordinates in your bedpe file were in hg19, while the coordinates of your mcool file were in hg38.
Thanks for your help! Using a contact matrix with a correct reference genome fixed the problem. I will close this issue now.
Hi, when Peakachu is trained on the .mcool data (source: 4DNFIXP4QG5B), the following error occurred.
In the meanwhile, the error seems to be specific to .mcool/.cool files since Peakachu works properly with the .hic file from the same experiment (source: 4DNFI1UEG1HD). May I ask if you would know how to fix this? Thanks in advance.