loops at resolutions other than 10kb

tariks / peakachu

Genome-wide contact analysis using sklearn

MIT License

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loops at resolutions other than 10kb #5

Closed oriolfornes closed 4 years ago

oriolfornes commented 4 years ago

Hi,

If I wish to call loops at, for example, 5kb resolution, do I need to retrain Peakachu or can I still use the models trained on Rao2014-GM12878-MboI-allreps-filtered.10kb.cool?

Thank you in advance!

P.S. I love the name of the tool :)

tariks commented 4 years ago

Thank you for your question! yes, you should train new models specific for 5kb maps. Other parameters like window size can stay the same for the most part. Good luck!