Open Dweson opened 4 years ago
I assume you mean an interaction list for training right? There are a couple options:
Hope that is helpful. If by annotation file you meant things like ChIP-seq tracks or other 1D annotations, these are available at the UCSC genome browser and ENCODE, but aren't used by Peakachu for training or prediction.
I'm sorry for disturbing you again. I want to try this model with other interaction matrix files. But I am in trouble with finding the annotation files of them, I have spent a lot of time on it. Thank you very much.