search

tarrlab / MRI-Tools

Miscellaneous general scripts for fMRI stuff.
0 stars 0 forks source link

Terminal Output in Command Window? #8

Open jpyles opened 7 years ago

jpyles commented 7 years ago

So this might just be something unique to my machine... but since I have Freesurfer installed every time I start terminal and my .cshrc is sourced the freesurfer info is output.

For whatever reason, this info is showing up in the Matlab command window too when renamieDicomSeries is run. Is there a way to prevent this? Or should I just deal with it? Thx!

working on directory: 9

cmdout =

-------- freesurfer-Darwin-OSX-stable-v6-beta-20161116-5037eae --------
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /Applications/freesurfer
FSFAST_HOME       /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR      /Applications/freesurfer/subjects
MNI_DIR           /Applications/freesurfer/mni
FSL_DIR           /usr/local/fsl
jpyles commented 7 years ago

@pitchaim I got the error: Ambiguous output redirect.

Hmm. Don't worry about it at the moment. I'm actually going to change my shell to bash so that might make a difference.