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tatonetti-lab
/
onsides
A resource of adverse drug effects extracted from FDA structured product labels
MIT License
62
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3
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Missing events in onsides
#61
ntatonetti
opened
2 weeks ago
1
DailyMed bulk downloads don't seem to contain all historical versions
#60
ntatonetti
opened
1 month ago
0
pt to llt
#59
sophiaKivelson
opened
1 month ago
0
upload_date in dm_spl_zip_files_meta_data is in MM/DD/YYYY format
#58
ntatonetti
opened
1 month ago
0
Problem w/ candesartan
#57
undinag
opened
2 months ago
0
v3.0.0 update
#54
yutarohtanaka
closed
6 months ago
0
updated directory management in spl processor
#53
gsirdeshmukh
closed
7 months ago
0
psql ddls
#52
wolfderby
closed
6 months ago
1
Add argument for label type
#51
gsirdeshmukh
opened
10 months ago
0
Implement tracking strategy for deployment_tracker
#50
gsirdeshmukh
opened
10 months ago
0
Refactor create_onides_datafiles.py to pull thresholds from experiments.json file
#49
gsirdeshmukh
closed
9 months ago
1
Move processing of deepcadrme output to a script
#48
gsirdeshmukh
opened
10 months ago
0
Add notebook and figure giving overview of the ONSIDES resource.
#47
zietzm
closed
10 months ago
0
download_and_verify does not properly check for already downloaded and verified file
#46
ntatonetti
opened
11 months ago
0
Mapping of drug and side effect IDs
#45
calyptis
opened
1 year ago
0
Investigate if and when the set ids for the labels change
#44
ntatonetti
opened
1 year ago
0
Extract source of side effect information
#43
ntatonetti
opened
1 year ago
0
Bug in TWOSIDES
#41
jasperhyp
opened
1 year ago
0
Extracting TWOSIDES-like polypharmacy side effects from ONSIDES
#40
jasperhyp
opened
1 year ago
0
Extract contraindications from labels
#39
ntatonetti
opened
1 year ago
0
some rows have data loss for columns ingredient_rxcuis and ingredient_names
#38
ntatonetti
opened
1 year ago
0
create sql subdirectory in src to house sql scripts
#37
ntatonetti
closed
1 year ago
0
Create load data sql file
#36
ntatonetti
closed
1 year ago
0
Validate and fix and create table sql file
#35
ntatonetti
closed
1 year ago
0
Add description of semantic versioning for OnSIDES
#34
ntatonetti
opened
1 year ago
0
Add some notes on running time/computational requirements
#33
ntatonetti
opened
1 year ago
1
Add website (nsides.io) markdown files to source control
#32
ntatonetti
opened
1 year ago
0
Create another reference set of 50-100 labels
#31
ntatonetti
opened
1 year ago
0
Add ability to continue a previously incomplete run
#30
ntatonetti
opened
1 year ago
0
OTC Labels
#29
ntatonetti
opened
1 year ago
1
OVERDOSAGE
#28
ntatonetti
opened
1 year ago
1
Characterize reference sets
#27
ntatonetti
opened
1 year ago
0
Look into using manual curation flags
#26
ntatonetti
opened
1 year ago
0
Tune the learning-rate hyperparameter for BW
#25
ntatonetti
opened
1 year ago
0
Implement dependency check into experiment_tracker.py
#24
ntatonetti
opened
1 year ago
0
Extract indications
#23
ntatonetti
opened
1 year ago
0
Add logging to pipeline
#22
ntatonetti
opened
1 year ago
0
Extract frequency data for ADRs
#21
ntatonetti
opened
1 year ago
0
Validate the quick start instructions on the README.md
#20
ntatonetti
opened
1 year ago
0
update SCHEMA.md with V02 structure
#19
ntatonetti
closed
1 year ago
1
Update the nsides.io page
#18
ntatonetti
closed
1 year ago
0
Web: add content for "previews"
#17
ntatonetti
closed
1 year ago
0
Web: drug pages with nothing on them
#16
ntatonetti
closed
1 year ago
1
Web: Searching shows "no results for drugs" while pending
#15
ntatonetti
closed
1 year ago
1
When if ever will analysis.json be restored to the repo?
#14
sincak
closed
2 years ago
2
Add official script performance to readme and website
#13
ntatonetti
closed
1 year ago
1
Mechanism to notify those interested in updates
#12
ntatonetti
opened
2 years ago
0
extra columns in label_map
#11
ntatonetti
closed
1 year ago
1
Remove unnecessary quotes around values in exported CSV files
#10
ntatonetti
closed
1 year ago
0
add PT-only adverse_reactions table
#9
ntatonetti
closed
1 year ago
1
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