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tavareshugo
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tutorial_DESeq2_contrasts
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A helper function allowing arbitrarily complex custom contrasts
#11
atakanekiz
opened
4 months ago
5
how to get single l2fc & padj for the additive effects of two factors of geneA (2 levels) and geneB (3 levels)
#10
Gloriafu
opened
6 months ago
7
when I calculate coefficient vectors for each group the results are not the same as when the coefficients estimated by DEseq
#9
pariaaliour
closed
6 months ago
7
Is the output of contrast = 2-1 logfoldchange2/logfoldchange1 or logfoldchange2-logfoldchange1?
#8
pariaaliour
closed
1 year ago
1
Contrasts for imbalanced and partially crossed designs
#7
tavareshugo
opened
2 years ago
1
Error in using contrasts and model matrix as shown in the tutorial
#6
hok-lee
opened
2 years ago
5
Deviation contrast and excluding samples via design matrix
#5
vtorda
opened
2 years ago
2
Not an issue but rather a request for LRT tutorial the way you have shown here for deseq2 model matrix design
#4
kcmtest
closed
2 years ago
6
equivalences for coef argument in lfcShrink()
#3
imendizabalCIC
closed
2 years ago
1
slide 8 nested contrast not always able to be done with named coefficients
#2
turkeyri
opened
2 years ago
0
inconsistent contrast results
#1
jasminetat
closed
2 years ago
1