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taxprofiler / taxpasta

TAXnomic Profile Aggregation and STAndardisation
https://taxpasta.readthedocs.io/
Apache License 2.0
31 stars 6 forks source link

[BUG] Certain parser problems are only warnings #100

Closed Midnighter closed 1 year ago

Midnighter commented 1 year ago

Certain parser issues should be raised as exceptions instead of warnings. Reported in https://github.com/pyOpenSci/software-submission/issues/84#issuecomment-1530191450.

taxpasta merge -p motus -o /tmp/motus.tsv \
    tests/data/motus/2612_pe-ERR5766176-db_mOTU.out \
    tests/data/motus/2612_se-ERR5766180-db_mOTU.out \
    tests/data/kraken2/2612_pe-ERR5766176-db1.kraken2.report.txt