taxprofiler / taxpasta

TAXnomic Profile Aggregation and STAndardisation
https://taxpasta.readthedocs.io/
Apache License 2.0
34 stars 7 forks source link

Feat biom tax table #134

Closed Midnighter closed 1 year ago

Midnighter commented 1 year ago
codecov-commenter commented 1 year ago

Codecov Report

Patch coverage: 83.33% and project coverage change: -0.02% :warning:

Comparison is base (82477a6) 85.89% compared to head (1dd4cf2) 85.87%.

:exclamation: Current head 1dd4cf2 differs from pull request most recent head 367257f. Consider uploading reports for the commit 367257f to get more accurate results

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #134 +/- ## ========================================== - Coverage 85.89% 85.87% -0.02% ========================================== Files 114 114 Lines 1772 1791 +19 Branches 319 325 +6 ========================================== + Hits 1522 1538 +16 - Misses 202 205 +3 Partials 48 48 ``` | [Files Changed](https://app.codecov.io/gh/taxprofiler/taxpasta/pull/134?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | Coverage Δ | | |---|---|---| | [...table\_writer/biom\_wide\_observation\_table\_writer.py](https://app.codecov.io/gh/taxprofiler/taxpasta/pull/134?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL3dpZGVfb2JzZXJ2YXRpb25fdGFibGVfd3JpdGVyL2Jpb21fd2lkZV9vYnNlcnZhdGlvbl90YWJsZV93cml0ZXIucHk=) | `77.27% <0.00%> (-12.21%)` | :arrow_down: | | [src/taxpasta/domain/service/taxonomy\_service.py](https://app.codecov.io/gh/taxprofiler/taxpasta/pull/134?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2RvbWFpbi9zZXJ2aWNlL3RheG9ub215X3NlcnZpY2UucHk=) | `100.00% <100.00%> (ø)` | | | [...tructure/domain/service/taxopy\_taxonomy\_service.py](https://app.codecov.io/gh/taxprofiler/taxpasta/pull/134?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2RvbWFpbi9zZXJ2aWNlL3RheG9weV90YXhvbm9teV9zZXJ2aWNlLnB5) | `75.67% <100.00%> (+3.51%)` | :arrow_up: |

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