feat: change output of BIOM format

taxprofiler / taxpasta

TAXnomic Profile Aggregation and STAndardisation

https://taxpasta.readthedocs.io/

Apache License 2.0

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feat: change output of BIOM format #149

Closed Midnighter closed 3 months ago

Midnighter commented 3 months ago

Lineages should now be properly aligned and output is mia compatible. This PR makes use of new features in taxopy 0.12 and improves lineage reporting. Additionally, the BIOM output now conforms with expectations from the R package mia.