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taxprofiler / taxpasta

TAXnomic Profile Aggregation and STAndardisation
https://taxpasta.readthedocs.io/
Apache License 2.0
34 stars 7 forks source link

Add Diamond #30

Closed maxibor closed 2 years ago

maxibor commented 2 years ago
codecov-commenter commented 2 years ago

Codecov Report

Base: 89.29% // Head: 91.53% // Increases project coverage by +2.23% :tada:

Coverage data is based on head (a1793e8) compared to base (e784277). Patch coverage: 98.38% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #30 +/- ## ========================================== + Coverage 89.29% 91.53% +2.23% ========================================== Files 22 34 +12 Lines 271 366 +95 Branches 8 8 ========================================== + Hits 242 335 +93 - Misses 24 25 +1 - Partials 5 6 +1 ``` | [Impacted Files](https://codecov.io/gh/taxprofiler/taxpasta/pull/30?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | Coverage Δ | | |---|---|---| | [...cture/application/centrifuge/centrifuge\_profile.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2NlbnRyaWZ1Z2UvY2VudHJpZnVnZV9wcm9maWxlLnB5) | `100.00% <ø> (ø)` | | | [...pplication/centrifuge/centrifuge\_profile\_reader.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2NlbnRyaWZ1Z2UvY2VudHJpZnVnZV9wcm9maWxlX3JlYWRlci5weQ==) | `84.61% <ø> (ø)` | | | [.../infrastructure/application/kaiju/kaiju\_profile.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2thaWp1L2thaWp1X3Byb2ZpbGUucHk=) | `100.00% <ø> (ø)` | | | [...rastructure/application/kraken2/kraken2\_profile.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2tyYWtlbjIva3Jha2VuMl9wcm9maWxlLnB5) | `100.00% <ø> (ø)` | | | [...ture/application/kraken2/kraken2\_profile\_reader.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2tyYWtlbjIva3Jha2VuMl9wcm9maWxlX3JlYWRlci5weQ==) | `73.33% <ø> (ø)` | | | [...ture/application/diamond/diamond\_profile\_reader.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2RpYW1vbmQvZGlhbW9uZF9wcm9maWxlX3JlYWRlci5weQ==) | `86.66% <86.66%> (ø)` | | | [...rc/taxpasta/infrastructure/application/\_\_init\_\_.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL19faW5pdF9fLnB5) | `100.00% <100.00%> (ø)` | | | [...sta/infrastructure/application/bracken/\_\_init\_\_.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2JyYWNrZW4vX19pbml0X18ucHk=) | `100.00% <100.00%> (ø)` | | | [...rastructure/application/bracken/bracken\_profile.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2JyYWNrZW4vYnJhY2tlbl9wcm9maWxlLnB5) | `100.00% <100.00%> (ø)` | | | [...ture/application/bracken/bracken\_profile\_reader.py](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None#diff-c3JjL3RheHBhc3RhL2luZnJhc3RydWN0dXJlL2FwcGxpY2F0aW9uL2JyYWNrZW4vYnJhY2tlbl9wcm9maWxlX3JlYWRlci5weQ==) | `100.00% <100.00%> (ø)` | | | ... and [15 more](https://codecov.io/gh/taxprofiler/taxpasta/pull/30/diff?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=None)

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Midnighter commented 2 years ago

Very nice 😃 Feels like support for profilers is becoming meaningful.