This is not a bug per se, but a preferred setting considering the IMPACT input maf that we use contains germline mutations. So we will have to explicitly exclude it from the input to the neo pipeline using Mutation_Status != "GERMLINE". Currently, all mutations are included.
This is not a bug per se, but a preferred setting considering the IMPACT input maf that we use contains germline mutations. So we will have to explicitly exclude it from the input to the neo pipeline using
Mutation_Status != "GERMLINE"
. Currently, all mutations are included.