Germline mutations from IMPACT maf needs to be filtered out before the run

taylor-lab / neoantigen-dev

neoantigen prediction from WES/WGS

4 stars 1 forks source link

Germline mutations from IMPACT maf needs to be filtered out before the run #11

Open ShwetaCh opened 4 years ago

ShwetaCh commented 4 years ago

This is not a bug per se, but a preferred setting considering the IMPACT input maf that we use contains germline mutations. So we will have to explicitly exclude it from the input to the neo pipeline using Mutation_Status != "GERMLINE". Currently, all mutations are included.