Open GoogleCodeExporter opened 9 years ago
When calculating the statistics in the Log.final.out, STAR considers both mates
of a paired-end read as one read. By default, STAR only outputs correctly
paired alignments. I think this should explain your observations.
If you have further questions, please post them at
https://groups.google.com/forum/#!forum/rna-star
or email me at dobin@cshl.edu
Original comment by adobin@gmail.com
on 25 Feb 2013 at 8:33
now it's clear. thank you.
however it's not obvious from the description of output..
Original comment by vkurys...@yahoo.com
on 26 Feb 2013 at 3:05
Original issue reported on code.google.com by
vkurys...@yahoo.com
on 25 Feb 2013 at 7:50