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tbaccata / amica

amica: an interactive and user-friendly web-based platform for the analysis of proteomics data
GNU General Public License v3.0
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Can't visualize tables #19

Closed stratei86 closed 1 year ago

stratei86 commented 1 year ago

Hi, when running the app on RStudio I get the following warning "Warning in is.call(funBody[[idx]]) && as.character(funBody[[idx]][[1]]) == : 'length(x) = 3 > 1' in coercion to 'logical(1)'" repeatedly in the console and I can't visualize the table with the differentially expressed proteins, but all the figures are produced normally. Could you help solving this issue? Thanks

tbaccata commented 1 year ago

Hello,

Thanks for reporting this issue! I have never encountered this warning message, but it seems to be related to a new R version (https://stackoverflow.com/questions/72848442/r-warning-lengthx-2-1-in-coercion-to-logical1)

Are you using a R version >= 4.2.x? I'll have to see what exactly changed with the new R version, and which parts of amica's output table code is affected by it.

But I guess, when you upload your files to the public server (https://bioapps.maxperutzlabs.ac.at/app/amica), everything is running fine?

Best, Sebastian

stratei86 commented 1 year ago

Hi,

I've moved to R version 4.1 from 4.2 and now everything works fine

Thanks