umxPlotGxE - export ggplot

tbates / umx

Making Structural Equation Modeling (SEM) in R quick & powerful

https://tbates.github.io/

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umxPlotGxE - export ggplot #139

Closed tbates closed 3 years ago

tbates commented 3 years ago

give user a gg= TRUE option, exporting a ggplot2 graph which they could then decorate/alter

[x] replace/enhance existing matplot code with ggplot call

https://openmx.ssri.psu.edu//node/4667

tbates commented 3 years ago

Now unstandardised example for pedagogical leading of the horse to water. Rplot

mcneale commented 3 years ago

Very nice - but IMO it’s much more important to show unstandardized estimates.

tbates commented 3 years ago

Very nice - but IMO it’s much more important to show unstandardized estimates.

Which is why we do both and explain why unstandardised is so much more informative 😀😎

mcneale commented 3 years ago

Yep, so only post graphs of unstandardized please! If you add CIs it would be great.

I think ALL GxE of complex traits (measured by items) should be forced to publish a Test Information Curve for the outcome measure alongside the findings. It’s way too easy to be fooled into thinking gxe when it’s simply a measurement artifact.

tbates commented 3 years ago

43 issues ago... https://github.com/tbates/umx/issues/96

feel free :-)