tbepler protein-sequence-embedding-iclr2019 issues

tbepler / protein-sequence-embedding-iclr2019

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

Other

253 stars 75 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Unable to download links from the page

#30 SuryaBalaji97 opened 3 months ago
2
-

#29 AxelGiottonini closed 1 year ago
0
Available data

#28 AxelGiottonini closed 1 year ago
3
Generating Fasta/Text file for different dataset

#26 vsomnath closed 3 years ago
1
Using pre-trained models

#25 mstrazar closed 3 years ago
3
The embedding sequence shape

#24 SaidaSaad closed 3 years ago
1
Update embed_sequences.py

#23 hartrials closed 3 years ago
0
Create an installable python package

#22 konstin opened 3 years ago
0
embed_sequences.py fails: AttributeError: 'LSTM' object has no attribute '_flat_weights'

#21 konstin closed 3 years ago
2
Runtime Error in eval_secstr.py

#20 Chenwf1025 closed 3 years ago
1
Reproduce performance problems

#19 DaHaiHuha closed 3 years ago
8
Update train_similarity_and_contact.py

#18 DaHaiHuha opened 4 years ago
0
Warning in Pytorch 1.0.0

#17 DaHaiHuha closed 4 years ago
2
RuntimeError in training scripts

#16 DaHaiHuha closed 4 years ago
2
How to use pretrained models to get the results.

#15 Rajratnpranesh closed 4 years ago
2
Protein encoder - PackedSequence error

#14 dominikabasaj closed 4 years ago
3
How can I load the pretrained models into pytorch?

#13 rainwala closed 4 years ago
10
IMP topology great but secondary structure not so much?

#12 smsaladi closed 4 years ago
3
Add Requirements and edit README

#11 greglever opened 4 years ago
1
Build error

#10 partrita closed 4 years ago
2
Data download not working

#9 ecvgit closed 5 years ago
2
RuntimeError: expected type torch.FloatTensor but got torch.LongTensor (run on CPU)

#8 0xooo2A closed 5 years ago
2
Unable to load pretrained model?

#7 YamamotoSayaka closed 5 years ago
4
RuntimeError: CUDNN_STATUS_EXECUTION_FAILED

#6 asawanggaa closed 5 years ago
2
1s in contact map?

#5 thomas-a-neil closed 5 years ago
2
Language Model Accuracy on Pfam?

#4 nickbhat closed 5 years ago
3
Question about sequence length

#3 kezhai closed 5 years ago
1
Pfam preprocessing?

#2 nickbhat closed 5 years ago
1
How to use the protein encoder?

#1 datduong closed 5 years ago
2