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tbepler / topaz

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
GNU General Public License v3.0
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particles format #103

Closed jianhaoc closed 3 years ago

jianhaoc commented 3 years ago

Hi, I see in the "topaz convert -s 8 -o data/EMPIAR-10025/processed/particles.txt data/EMPIAR-10025/rawdata/particles.txt" (https://github.com/tbepler/topaz/blob/master/tutorial/01_quick_start_guide.ipynb). I wonder what is the format of particles.txt? Is it a file containing particles of all micrographs? Thank you!

tbepler commented 3 years ago

Here's a sample particles file. It should contain particles for all of the micrographs you want to train on. There's also more information here

sample_particles.txt