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tbepler / topaz

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
GNU General Public License v3.0
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Store trained model in models for denoise_image function #41

Closed JayJaewonYoo closed 4 years ago

JayJaewonYoo commented 4 years ago

Training denoising models cannot be completed because models is not defined when pretrained models are not used, and models is required for the denoise_image function.

tbepler commented 4 years ago

As a note to anyone reading this, denoising models can be trained. They need to be trained and then used in separate command runs. With this patch it is possible to train and then denoise with a single command.