Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
GNU General Public License v3.0
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Add warning for when micrograph image names include the file extension #44
Including the file extension in the micrograph name causes topaz to fail to find micrographs. See for example https://github.com/tbepler/topaz/blob/master/topaz/commands/train_test_split.py#L30
It would be great if topaz could correct these names automatically, but a warning when micrograph names contain "." is a good place to start.