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tbepler / topaz

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
GNU General Public License v3.0
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Error when resizing particles with topaz particle_stack #55

Closed TehNomad closed 4 years ago

TehNomad commented 4 years ago

I tried to make a particle stack from topaz coordinate picks with the --resize flag, but I got the following error: NameError: name 'downsample' is not defined

I fixed it by adding: from topaz.utils.image import downsample to particle_stack.py

tbepler commented 4 years ago

Thanks for reporting this error! Now fixed in commit d98be4aee869eb90843aee03c77224337bedd563.