search

tbepler / topaz

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
GNU General Public License v3.0
169 stars 63 forks source link

topaz 0.2.5 not available through shub, conda, or pip. #86

Closed ulloaa closed 2 years ago

ulloaa commented 3 years ago

Are you guys planning on making topaz 0.2.5 available on shub, conda or pip? Thanks.

tbepler commented 3 years ago

Yes, we will be releasing 0.2.5 on conda, pip, etc. https://github.com/tbepler/topaz/issues/81

dzyla commented 3 years ago

Hi,

It is still not available to download via pip or conda. Could you tell how to get it?

tbepler commented 3 years ago

You can install using the "from source" instructions (https://github.com/tbepler/topaz#install-the-dependencies).

dzyla commented 3 years ago

I tried to do it from the source but it is not possible to checkout version 0.2.5:

git checkout v0. v0.0.0 v0.1.0 v0.2.0 v0.2.1 v0.2.2 v0.2.3 v0.2.4

The version on GitHub is 0.2.5, it has not description tho. Only after installation, it pops up. Anyway, it worked.

tbepler commented 3 years ago

0.2.5 isn't tagged yet, but you can use the current development version by installing from the master branch which is 0.2.5.

rajssai commented 2 years ago

Is there way to update topaz from 2.4 to 2.5 in conda environment using CLI

Anthchirp commented 2 years ago

There is still no 0.2.5 uploaded to conda, https://anaconda.org/tbepler/topaz/files

DarnellGranberry commented 2 years ago

Hi all, version 0.2.5a has been deployed to PyPI and Anaconda.

Anthchirp commented 2 years ago

Is the prerelease marking intentional or is this considered a stable release?

DarnellGranberry commented 2 years ago

Is the prerelease marking intentional or is this considered a stable release?

Hi @Anthchirp, thanks for pointing that out. I've corrected the version number, so it is no longer shown as a prerelease.