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tbepler
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topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
GNU General Public License v3.0
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Updated the GUI to v0.2.2
#38
alexjnoble
closed
4 years ago
0
Add ETA indicator to topaz preprocess?
#37
olibclarke
closed
5 years ago
8
THCudaCheck FAIL error
#36
olibclarke
closed
5 years ago
8
add option to predict on micrographs/tomograms in chunks to reduce GPU RAM usage
#35
tbepler
closed
3 months ago
1
segfault from denoising
#34
simonbyrne
closed
5 years ago
5
Request to add CUDA warning
#33
nysbc
closed
5 years ago
1
Error when importing load_image
#32
Kajoura
closed
5 years ago
3
topaz tutorial error
#31
jliu321
closed
5 years ago
3
error upon launching topaz
#30
shabihshakeel
closed
5 years ago
3
Anomalous 0
#29
nysbc
closed
5 years ago
0
Training the denoise model
#28
phonchi
closed
5 years ago
4
GUI to v0.2.1
#27
nysbc
closed
5 years ago
1
Training test dataset failed
#26
mplockhartuom
closed
5 years ago
1
GUI --> v0.2.0
#25
nysbc
closed
5 years ago
1
GUI and Readme update
#24
nysbc
closed
5 years ago
0
Allow Topaz to read and write JPEG files
#23
alexjnoble
closed
5 years ago
1
Add files via upload
#22
nysbc
closed
5 years ago
0
Request: Make extract.py accept -1 for --num-workers all processors
#21
alexjnoble
closed
5 years ago
1
Preprocessing scaling default changed and version number to v0.2.0
#20
nysbc
closed
5 years ago
1
GUI update for v0.2.0 and Singularity recipe
#19
nysbc
closed
5 years ago
0
displayed pick doesn't go large with zoom in
#18
hellont92
opened
5 years ago
5
issue with get_image_path in topaz/commands/train_test_split.py
#17
qurainia
closed
5 years ago
1
`topaz preprocess --scale 1` produces numpy error
#16
alexjnoble
closed
5 years ago
1
Allow 'topaz convert' to set STAR file metadata
#15
tbepler
closed
5 years ago
1
Allow 'topaz particle_stack' to accept STAR and CSV input files
#14
tbepler
opened
5 years ago
0
topaz convert fails with large number of box files
#13
olibclarke
closed
5 years ago
6
Can't extract
#12
olibclarke
closed
5 years ago
49
Can't open the walkthrough
#11
rudaluna
closed
5 years ago
2
How to install it?
#10
pconesa
closed
5 years ago
3
Problem with data loader
#9
bHimes
closed
5 years ago
2
Minor documentation
#8
bHimes
closed
5 years ago
3
topaz star_particles_threshold command crashed
#7
refolding
closed
5 years ago
2
assert positive_fraction <= pi
#6
micahrapp
closed
5 years ago
5
New GUI and small Readme updates
#5
nysbc
closed
5 years ago
0
Readme typos and clarifications
#4
alexjnoble
closed
5 years ago
0
Docker build fails
#3
olibclarke
closed
5 years ago
2
Readme made fancy
#2
alexjnoble
closed
5 years ago
0
Coverting STAR files to CSV: TypeError: 'NoneType' object has no attribute '__getitem__'
#1
charbj
closed
6 years ago
1
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