tbischler / PEAKachu

Peak calling tool for CLIP-seq data
ISC License
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Error when trying to run PEAKachu #20

Open jalalsiddiqui opened 3 years ago

jalalsiddiqui commented 3 years ago

(peakachu) bash-4.2$ peakachu R[write to console]: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/local/R/intel/18.0/3.5.0/lib64/R/library/methods/libs/methods.so': libR.so: cannot open shared object file: No such file or directory Traceback (most recent call last): File "/users/PAS1143/osu8165/envs/peakachu/bin/peakachu", line 6, in from peakachulib.controller import Controller File "/users/PAS1143/osu8165/envs/peakachu/lib/python3.8/site-packages/peakachulib/controller.py", line 6, in from peakachulib.window import WindowApproach File "/users/PAS1143/osu8165/envs/peakachu/lib/python3.8/site-packages/peakachulib/window.py", line 11, in from peakachulib.tmm import TMM File "/users/PAS1143/osu8165/envs/peakachu/lib/python3.8/site-packages/peakachulib/tmm.py", line 3, in from rpy2.robjects import r, pandas2ri File "/users/PAS1143/osu8165/envs/peakachu/lib/python3.8/site-packages/rpy2/robjects/init.py", line 19, in from rpy2.robjects.robject import RObjectMixin, RObject File "/users/PAS1143/osu8165/envs/peakachu/lib/python3.8/site-packages/rpy2/robjects/robject.py", line 58, in class RObjectMixin(object): File "/users/PAS1143/osu8165/envs/peakachu/lib/python3.8/site-packages/rpy2/robjects/robject.py", line 70, in RObjectMixin __show = _get_exported_value('methods', 'show') File "/users/PAS1143/osu8165/envs/peakachu/lib/python3.8/site-packages/rpy2/rinterfacelib/conversion.py", line 45, in cdata = function(*args, **kwargs) File "/users/PAS1143/osu8165/envs/peakachu/lib/python3.8/site-packages/rpy2/rinterface.py", line 677, in call raise embedded.RRuntimeError(_rinterface._geterrmessage()) rpy2.rinterface_lib.embedded.RRuntimeError: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/local/R/intel/18.0/3.5.0/lib64/R/library/methods/libs/methods.so': libR.so: cannot open shared object file: No such file or directory