tbischler / PEAKachu

Peak calling tool for CLIP-seq data
ISC License
14 stars 5 forks source link

Latest version of PEAKachu uses depecrated functions of pandas library #22

Open AmhedVargas opened 1 year ago

AmhedVargas commented 1 year ago

A fresh install of PEAKachu via mamba (conda) gave me some errors due to .append() and .str() methods being altered in most recent pandas library. A simple solution is to install PEAKachu with a downgraded version of pandas, e.g.:

mamba create -c bioconda -n peakachu peakachu pandas==1.4.0

However, it will be good if the code is updated with the most recent pandas library (way faster) or at least specified on the README file.

Cheers,

Amhed