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tblaschke / reinvent

Updated code for molecule generator REINVENT
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ModuleNotFoundError: No module named 'gitdb.utils.compat' #1

Closed FluidDK closed 4 years ago

FluidDK commented 4 years ago

I got error with gitpython=2.1.3 while trying to install it with "conda env create -f environment.yml" so I removed it from the file and install it directly with "pip install gitpython==2.1.3" from a Jupyer Notebook running from the conda reinvent environment and kernel. When I try to import or run the reinforce_model.py I get this error: ModuleNotFoundError: No module named 'gitdb.utils.compat'.

Do you know how I can proceed from here? Screenshot from 2020-06-14 11-49-26

tblaschke commented 4 years ago

Yes you are right. It seems some dependencies got updated and now code to obtain the metadata from the git repo does not work anymore.

I will have a look into this in the next days. What reinforce_model is trying to do, is to obtain the current git commit hash and save it in the metadata.json. As I've never really used this feature I guess I will just remove it and not try to save the current git hash in the metadata.

tblaschke commented 4 years ago

As a quick workaround: Modify your local version of the reinforce_model and delete the import git at line 11. Then modify the function get_commit_hash() at line 19 to return an empty string. E.g.:

def get_commit_hash(): return ""