Hi @tderrien @vwucher @flegeai
I have used your program with individual gtf files generated using cufflinks and it is working alright. I have used cuffmerge to combine different gtf files (technical replicates) but the merged.gtf file does not produce an output in the filter module. It creates an empty candidate_lncRNA.gtf file.
Sorry for the late reply. Did you manage to use your merged file within FEELnc?
If no, could you tell us the parameters used for the filter module?
Best
Hi @tderrien @vwucher @flegeai I have used your program with individual gtf files generated using cufflinks and it is working alright. I have used cuffmerge to combine different gtf files (technical replicates) but the merged.gtf file does not produce an output in the filter module. It creates an empty candidate_lncRNA.gtf file.
head merged.gtf
.....truncated.. What do I need to do to proceed with the merged file?
Thanks.