I'm studying LncRNA and used the noncode database (http://www.noncode.org) for my own study. Unfortunately, there is only a fasta file in this database and no GTF file.
While to classify lncRNAs based on the following command, a GTF file is required
FEELnc_classifier.pl -i lncRNA.gtf -a ref_annotation.GTF > lncRNA_classes.txt
so, How can I use the fasta file of this database to create lncRNA classification?
Can I add an option in feelnc software to use the fasta file?
Hello,
I'm studying LncRNA and used the noncode database (http://www.noncode.org) for my own study. Unfortunately, there is only a fasta file in this database and no GTF file. While to classify lncRNAs based on the following command, a GTF file is required
FEELnc_classifier.pl -i lncRNA.gtf -a ref_annotation.GTF > lncRNA_classes.txt
so, How can I use the fasta file of this database to create lncRNA classification? Can I add an option in feelnc software to use the fasta file?