Open nhintruong opened 2 months ago
I'm attempting to run the source code from https://github.com/tdhock/PeakSegFPOP-paper/blob/master/figure-large-margin.R, but I'm unable to locate the required regions.RData file in the repository.
regions.RData
Here is the error I met:
> set.name <- ""H3K4me3_TDH_immune"" > chunk.id <- 5 > chunk.name <- paste0(set.name, ""/"", chunk.id) > regions.file <- file.path(""data"", set.name, chunk.id, ""regions.RData"") > load(regions.file) Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection In addition: Warning message: In readChar(con, 5L, useBytes = TRUE) : cannot open compressed file 'data/H3K4me3_TDH_immune/5/regions.RData', probable reason 'No such file or directory'"
@tdhock Could you please check if this folder is still available or if it has been renamed? Thank you for your assistance
these data need to be downloaded from https://rcdata.nau.edu/genomic-ml/chip-seq-chunk-db/ for example https://rcdata.nau.edu/genomic-ml/chip-seq-chunk-db/data/H3K4me3_TDH_immune/5/regions.RData
I'm attempting to run the source code from https://github.com/tdhock/PeakSegFPOP-paper/blob/master/figure-large-margin.R, but I'm unable to locate the required
regions.RData
file in the repository.Here is the error I met:
@tdhock Could you please check if this folder is still available or if it has been renamed? Thank you for your assistance