tdwg / gbwg

Genomic Biodiversity Interest Group
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DwC Mapping - MIXS:0000001 samp_size #22

Closed tucotuco closed 3 years ago

tucotuco commented 3 years ago
Field Value
subject_id http://rs.tdwg.org/dwc/terms/sampleSizeValue
subject_definition A numeric value for a measurement of the size (time duration, length, area, or volume) of a sample in a sampling event.
subject_usage_notes A sampleSizeValue must have a corresponding sampleSizeUnit.
subject_examples 5 for sampleSizeValue with metre for sampleSizeUnit.
predicate_id skos:broadMatch
object_id MIXS:0000001
object_label samp_size
object definition Amount or size of sample (volume, mass or area) that was collected
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx
comment dwc:sampleSizeValue requires the units of the measure to be given in dwc:sampleSizeUnit.

and

Field Value
subject_id http://rs.tdwg.org/dwc/terms/sampleSizeUnit
subject_definition The unit of measurement of the size (time duration, length, area, or volume) of a sample in a sampling event.
subject_usage_notes A sampleSizeUnit must have a corresponding sampleSizeValue, e.g., 5 for sampleSizeValue with metre for sampleSizeUnit.
subject_examples minute, hour, day, metre, square metre, cubic metre
predicate_id skos:broadMatch
object_id MIXS:0000001
object_label samp_size
object definition Amount or size of sample (volume, mass or area) that was collected
object source https://github.com/GenomicsStandardsConsortium/mixs-legacy/blob/master/mixs5/mixs_v5.xlsx
comment dwc:sampleSizeUnit must accompany the measure given in dwc:sampleSizeValue.
ymgan commented 3 years ago

Related MIxS v6 issue: https://github.com/GenomicsStandardsConsortium/mixs/issues/72

raissameyer commented 3 years ago

Suggested syntax predicate for the mapping above https://github.com/tdwg/gbwg/issues/22#issue-805176461

Field Value
subject_id http://rs.tdwg.org/dwc/terms/sampleSizeValue
subject_value_syntax - expected_value - unit {float} - measurement value
syntax_predicate_id skos:narrowMatch
object_id MIXS:0000001
object_value_syntax - expected_value - unit {float}{unit} - measurement value - millliter, gram, milligram, liter
syntax_comment MIxS expects {float} {unit}, while DwC only expects {float}

and

Field Value
subject_id http://rs.tdwg.org/dwc/terms/sampleSizeUnit
subject_value_syntax - expected_value - unit {unit} - measurement unit
syntax_predicate_id skos:narrowMatch
object_id MIXS:0000001
object_value_syntax - expected_value - unit {float}{unit} - measurement value - millliter, gram, milligram, liter
syntax_comment MIxS expects {float} {unit}, while DwC only expects {unit}