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teamtomo
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fidder
Detect and erase gold fiducials in cryo-EM images
https://teamtomo.org/fidder/
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Prediction gets stuck
#37
hamid13r
opened
3 weeks ago
8
fidder抓取app
#36
77599
closed
1 month ago
3
Erase features in 3D from 3D mask
#35
brisvag
opened
2 months ago
3
Fix bug in local_mean my using min instead of comparison
#34
brisvag
closed
2 months ago
0
About current state and possible integration in Scipion
#33
JorMaister
closed
3 months ago
4
DistBackendError:NCCL error when running fidder predict
#32
fg1215
closed
2 months ago
2
Write the erased image in the data type of the input image
#31
dmichalak
closed
1 year ago
4
running Fidder on raw frames from tilt series
#30
karine-jan
closed
9 months ago
1
Add micrograph stack support to predict and erase CLIs
#29
alisterburt
closed
1 year ago
6
add support for tilt-series
#28
alisterburt
closed
1 year ago
0
some issue with float32 being required
#27
alisterburt
closed
1 year ago
1
load model onto cpu first by default
#26
alisterburt
closed
1 year ago
0
deserialisation of mps checkpoint on linux might be problematic using pytorch-lightning 2.0
#25
alisterburt
closed
1 year ago
1
Add non-vectorised code path to pixel count map generation
#24
alisterburt
closed
1 year ago
0
add compatibility for pytorch 2.0 and pytorch-lightning 2.0
#23
alisterburt
closed
1 year ago
0
Using another trained model
#22
hamid13r
closed
1 year ago
5
add notes about cuda 10.X compatibility
#21
alisterburt
closed
1 year ago
0
remove python 3.11 tests
#20
alisterburt
closed
1 year ago
0
Remove reference to TF.get_dimensions for compatibility
#19
alisterburt
closed
1 year ago
0
Remove windows and macos tests from testing matrix and add python=3.11
#18
alisterburt
closed
1 year ago
0
Fidder for older PyTorch versions
#17
cyanching
closed
1 year ago
6
Retrained with new data 21/02/23
#16
alisterburt
closed
1 year ago
0
update referencce to training data on zenodo
#15
alisterburt
closed
1 year ago
0
Suboptimal performance
#14
JulienMaufront
closed
1 year ago
8
AttributeError: module 'torchvision.transforms.functional' has no attribute 'get_dimensions'
#13
JulienMaufront
closed
1 year ago
4
add refs to BoxNet/Warp in README/docs
#12
alisterburt
closed
1 year ago
0
fix broken link in readme
#11
alisterburt
closed
1 year ago
0
update readme for release
#10
alisterburt
closed
1 year ago
0
Retrain 6th December 2022
#9
alisterburt
closed
1 year ago
0
Use pre-downsampled training data
#8
alisterburt
closed
1 year ago
0
prediction mask threshold API change and doc update
#7
alisterburt
closed
1 year ago
0
Initial docs
#6
alisterburt
closed
1 year ago
0
GHIFS
#5
alisterburt
opened
1 year ago
1
Remove pip cache and fix tests to get CI running
#4
alisterburt
closed
1 year ago
0
fix erase fiducials tests
#3
alisterburt
closed
1 year ago
0
rename erasing tests
#2
alisterburt
closed
1 year ago
0
add CI
#1
alisterburt
closed
1 year ago
0