teamtomo libtilt issues

teamtomo / libtilt

Image processing for cryo-electron microscopy in PyTorch

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test decorator for cpu and cuda

#75 McHaillet closed 2 weeks ago
8
Torch unravel index

#74 McHaillet closed 2 weeks ago
1
add 2D/3D rotations

#73 alisterburt opened 3 months ago
0
unittesting device agnostic code

#72 McHaillet closed 2 weeks ago
3
fix padding in rescaling to use reflect correctly

#71 McHaillet closed 3 months ago
1
Finding shifts between images using correlation

#70 McHaillet closed 3 months ago
3
Defining generic wrapper decorators

#69 rsanchezgarc opened 3 months ago
3
sample dft 2d

#68 alisterburt opened 4 months ago
0
Projection from 2D -> 1D for common lines

#67 McHaillet closed 4 months ago
3
alignment API

#66 alisterburt opened 4 months ago
5
2D to 1D projection for common lines

#65 alisterburt closed 4 months ago
0
2D +3D unified affine transforms API

#64 alisterburt opened 4 months ago
7
Example coarse alignment

#63 McHaillet closed 4 months ago
6
extract_central_slices_rfft performance

#62 rsanchezgarc opened 4 months ago
4
add 3d rescaling

#61 alisterburt opened 4 months ago
0
Update patch extraction API

#60 alisterburt closed 4 months ago
0
add 3d rescaling

#59 alisterburt opened 4 months ago
0
Disagrement between relion_project and from libtilt.projection.project_fourier

#58 rsanchezgarc opened 4 months ago
14
add soft edge code breaks if device is cuda

#57 alisterburt opened 5 months ago
0
use vmap instead of list comprehension in real space projection code

#56 alisterburt opened 5 months ago
0
grid flip is slow in central slice grid generation

#55 alisterburt opened 5 months ago
2
Rsg devel

#54 rsanchezgarc opened 5 months ago
7
Add resolution threshold to correlate_dft_2d

#53 rsanchezgarc opened 7 months ago
1
actually use do_gridding_correction flag

#52 alisterburt closed 8 months ago
0
backproject_fourier.py backproject_fourier(...) do_gridding_correction argument is not used

#51 rsanchezgarc closed 8 months ago
1
type hints updated in ctf_2d.calculate_ctf

#50 rsanchezgarc closed 8 months ago
1
calculate_ctf support Tensors as input

#49 rsanchezgarc closed 7 months ago
4
remove duplicate parameter from coordinate grid docstring

#48 alisterburt closed 11 months ago
0
refactor extract from -> sample

#47 alisterburt closed 11 months ago
0
fix off by one in bounds check for 2d sampling

#46 alisterburt closed 11 months ago
0
fix off by one in bounds check

#45 alisterburt closed 11 months ago
0
add 2d correlation

#44 alisterburt closed 1 year ago
0
example of projection matching TSA in Fourier space

#43 alisterburt closed 1 year ago
0
refactor shift and rescale API

#42 alisterburt closed 1 year ago
0
factor out central slice insertion and fix bug in deconvolution

#41 alisterburt closed 1 year ago
0
factor out central slice extraction in fourier space projection code

#40 alisterburt closed 1 year ago
0
toy implementation of tilt-series alignment by projection matching

#39 alisterburt closed 1 year ago
0
Added in test

#38 jdickerson95 closed 1 year ago
0
Playing with code. Added b factor envelope. No test yet.

#37 jdickerson95 closed 1 year ago
1
update template matching example to use new coordinate to image api

#36 alisterburt closed 1 year ago
0
add API for rendering coordinate data as 2d/3d images

#35 alisterburt closed 1 year ago
0
new rotational average dft API

#34 alisterburt closed 1 year ago
0
add template matching example

#33 alisterburt closed 1 year ago
0
add 'virtual tomogram' example

#32 alisterburt closed 1 year ago
0
move utils into libtilt namespace

#31 alisterburt closed 1 year ago
0
tidy up - remove some non-torch and move utils to libtilt namespace

#30 alisterburt closed 1 year ago
0
add 2D+t CTF estimation implementation example

#29 alisterburt closed 1 year ago
0
Add motion correction toy example and improve patch grid API

#28 alisterburt closed 1 year ago
0
Use rfft for slice extraction/insertion - 2x speedup

#27 alisterburt closed 1 year ago
0
correctly name rfft mask in fsc tests

#26 alisterburt closed 1 year ago
0