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teamtomo
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libtilt
Image processing for cryo-electron microscopy in PyTorch
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feat: added 2D movie dose weighting
#76
jdickerson95
opened
1 month ago
1
test decorator for cpu and cuda
#75
McHaillet
closed
5 months ago
8
Torch unravel index
#74
McHaillet
closed
5 months ago
1
add 2D/3D rotations
#73
alisterburt
opened
7 months ago
0
unittesting device agnostic code
#72
McHaillet
closed
5 months ago
3
fix padding in rescaling to use reflect correctly
#71
McHaillet
closed
8 months ago
1
Finding shifts between images using correlation
#70
McHaillet
closed
8 months ago
3
Defining generic wrapper decorators
#69
rsanchezgarc
opened
8 months ago
3
sample dft 2d
#68
alisterburt
opened
8 months ago
0
Projection from 2D -> 1D for common lines
#67
McHaillet
closed
8 months ago
3
alignment API
#66
alisterburt
opened
8 months ago
5
2D to 1D projection for common lines
#65
alisterburt
closed
8 months ago
0
2D +3D unified affine transforms API
#64
alisterburt
opened
8 months ago
7
Example coarse alignment
#63
McHaillet
closed
8 months ago
6
extract_central_slices_rfft performance
#62
rsanchezgarc
opened
9 months ago
4
add 3d rescaling
#61
alisterburt
opened
9 months ago
0
Update patch extraction API
#60
alisterburt
closed
9 months ago
0
add 3d rescaling
#59
alisterburt
opened
9 months ago
0
Disagrement between relion_project and from libtilt.projection.project_fourier
#58
rsanchezgarc
opened
9 months ago
14
add soft edge code breaks if device is cuda
#57
alisterburt
opened
10 months ago
0
use vmap instead of list comprehension in real space projection code
#56
alisterburt
opened
10 months ago
0
grid flip is slow in central slice grid generation
#55
alisterburt
opened
10 months ago
2
Rsg devel
#54
rsanchezgarc
opened
10 months ago
7
Add resolution threshold to correlate_dft_2d
#53
rsanchezgarc
opened
1 year ago
1
actually use do_gridding_correction flag
#52
alisterburt
closed
1 year ago
0
backproject_fourier.py backproject_fourier(...) do_gridding_correction argument is not used
#51
rsanchezgarc
closed
1 year ago
1
type hints updated in ctf_2d.calculate_ctf
#50
rsanchezgarc
closed
1 year ago
1
calculate_ctf support Tensors as input
#49
rsanchezgarc
closed
1 year ago
4
remove duplicate parameter from coordinate grid docstring
#48
alisterburt
closed
1 year ago
0
refactor extract from -> sample
#47
alisterburt
closed
1 year ago
0
fix off by one in bounds check for 2d sampling
#46
alisterburt
closed
1 year ago
0
fix off by one in bounds check
#45
alisterburt
closed
1 year ago
0
add 2d correlation
#44
alisterburt
closed
1 year ago
0
example of projection matching TSA in Fourier space
#43
alisterburt
closed
1 year ago
0
refactor shift and rescale API
#42
alisterburt
closed
1 year ago
0
factor out central slice insertion and fix bug in deconvolution
#41
alisterburt
closed
1 year ago
0
factor out central slice extraction in fourier space projection code
#40
alisterburt
closed
1 year ago
0
toy implementation of tilt-series alignment by projection matching
#39
alisterburt
closed
1 year ago
0
Added in test
#38
jdickerson95
closed
1 year ago
0
Playing with code. Added b factor envelope. No test yet.
#37
jdickerson95
closed
1 year ago
1
update template matching example to use new coordinate to image api
#36
alisterburt
closed
1 year ago
0
add API for rendering coordinate data as 2d/3d images
#35
alisterburt
closed
1 year ago
0
new rotational average dft API
#34
alisterburt
closed
1 year ago
0
add template matching example
#33
alisterburt
closed
1 year ago
0
add 'virtual tomogram' example
#32
alisterburt
closed
1 year ago
0
move utils into libtilt namespace
#31
alisterburt
closed
1 year ago
0
tidy up - remove some non-torch and move utils to libtilt namespace
#30
alisterburt
closed
1 year ago
0
add 2D+t CTF estimation implementation example
#29
alisterburt
closed
1 year ago
0
Add motion correction toy example and improve patch grid API
#28
alisterburt
closed
1 year ago
0
Use rfft for slice extraction/insertion - 2x speedup
#27
alisterburt
closed
1 year ago
0
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