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teamtomo / membrain-seg

membrane segmentation in 3D for cryo-ET
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pip install . is not installting tomo_processing module #18

Closed truatpasteurdotfr closed 12 months ago

truatpasteurdotfr commented 12 months ago

Hi

I have installed membrain-seg to a shared space for our group member and I had to use pip install . instead of pip install -e . to copy the python modules to the miniconda3/envs/membrain-seg/lib/python3.9/site-packages folder. The membrain_seg is copied but not tomo_preprocessing.

Cheers

Tru

LorenzLamm commented 12 months ago

Hi Tru, Thanks a lot for raising this issue!

Apparently installing via pip install . using the pyproject.toml file only supports to install a single package -- in this case membrain_seg, but neither the tomo_preprocessing nor the annotations package.

We will probably restructure the package to have one main package (membrain_seg) with multiple sub-packages.

Will try to implement this as soon as possible and get back to you.

Best, Lorenz

alisterburt commented 12 months ago

closed by #19 - pip install . should now work 🙂