teamtomo / membrain-seg

membrane segmentation in 3D for cryo-ET
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Pyto tomoloading #21

Closed LorenzLamm closed 11 months ago

LorenzLamm commented 11 months ago

Replacement of the mrcfile package for tomogram loading by pyto (https://github.com/vladanl/Pyto). This keeps the tomograms' meta information like pixel size and should avoid compatibility issues with further processing.

Not very elegantly, I copied the corresponding script from https://github.com/vladanl/Pyto/blob/master/pyto/io/image_io.py

I guess it would be better to have it as a dependency, but it's not pip-installable. Is there a better way?