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teamtomo / membrain-seg

membrane segmentation in 3D for cryo-ET
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add skeletonization code #65

Closed Hanyi11 closed 2 months ago

codecov-commenter commented 2 months ago

Codecov Report

Attention: Patch coverage is 0% with 135 lines in your changes are missing coverage. Please review.

Project coverage is 0.00%. Comparing base (bea5ae0) to head (d005be5). Report is 5 commits behind head on main.

Files Patch % Lines
...embrain_seg/segmentation/skeletonization/diff3d.py 0.00% 34 Missing :warning:
...membrain_seg/segmentation/skeletonization/eig3d.py 0.00% 31 Missing :warning:
...rain_seg/segmentation/skeletonization/nonmaxsup.py 0.00% 31 Missing :warning:
src/membrain_seg/segmentation/skeletonize.py 0.00% 31 Missing :warning:
src/membrain_seg/segmentation/cli/ske_cli.py 0.00% 6 Missing :warning:
src/membrain_seg/segmentation/cli/__init__.py 0.00% 1 Missing :warning:
src/membrain_seg/segmentation/networks/unet.py 0.00% 1 Missing :warning:

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Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #65 +/- ## ====================================== Coverage 0.00% 0.00% ====================================== Files 40 45 +5 Lines 1411 1545 +134 ====================================== - Misses 1411 1545 +134 ```

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LorenzLamm commented 2 months ago

Thanks a lot for the updates @Hanyi11 It still has some issues with small points close to the membrane, but efficiency is okay now. Let's merge this and improve performance in a future update :)