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teamtomo / membrain-seg

membrane segmentation in 3D for cryo-ET
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"Why does an assignment issue occur after the installation is complete?" #71

Closed xingxingjiukunkun closed 4 days ago

xingxingjiukunkun commented 1 week ago

(membrain) [SLURM:1166] emuser@gpu2:/public/apps/em/membrain-seg $ membrain Traceback (most recent call last): File "/public/apps/em/yes/envs/membrain/bin/membrain", line 5, in from membrain_seg.segmentation.cli import cli File "/public/apps/em/yes/envs/membrain/lib/python3.9/site-packages/membrain_seg/segmentation/cli/init.py", line 5, in from .segment_cli import segment # noqa: F401 File "/public/apps/em/yes/envs/membrain/lib/python3.9/site-packages/membrain_seg/segmentation/cli/segment_cli.py", line 12, in from ..segment import segment as _segment File "/public/apps/em/yes/envs/membrain/lib/python3.9/site-packages/membrain_seg/segmentation/segment.py", line 17, in from .dataloading.memseg_augmentation import get_mirrored_img, get_prediction_transforms File "/public/apps/em/yes/envs/membrain/lib/python3.9/site-packages/membrain_seg/segmentation/dataloading/memseg_augmentation.py", line 18, in from membrain_seg.segmentation.dataloading.transforms import ( File "/public/apps/em/yes/envs/membrain/lib/python3.9/site-packages/membrain_seg/segmentation/dataloading/transforms.py", line 608, in AxesShuffle = Compose( File "/public/apps/em/yes/envs/membrain/lib/python3.9/site-packages/monai/transforms/compose.py", line 251, in init self.set_random_state(seed=get_seed()) File "/public/apps/em/yes/envs/membrain/lib/python3.9/site-packages/monai/transforms/compose.py", line 263, in set_random_state _transform.set_random_state(seed=self.R.randint(MAX_SEED, dtype="uint32")) File "/public/apps/em/yes/envs/membrain/lib/python3.9/site-packages/monai/transforms/transform.py", line 207, in set_random_state _seed = _seed % MAX_SEED OverflowError: Python integer 4294967296 out of bounds for uint32

GenevieveBuckley commented 1 week ago

Duplicate of https://github.com/teamtomo/membrain-seg/issues/70, this issue can be closed.

LorenzLamm commented 4 days ago

Thanks for reporting this issue @xingxingjiukunkun. As mentioned, this is duplicate of https://github.com/teamtomo/membrain-seg/issues/70 and hopefully is now resolved with https://github.com/teamtomo/membrain-seg/pull/72.