[ ERROR] - global name 'cmd' is not defined

tecangenomics / nudup

NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.

http://www.tecangenomics.com

GNU Lesser General Public License v3.0

14 stars 9 forks source link

[ ERROR] - global name 'cmd' is not defined #13

Closed yongchao closed 6 years ago

yongchao commented 6 years ago

Hi,

When I run the program, it complained that

"[ ERROR] - global name 'cmd' is not defined"

This is due to the mistyped variable cmd at line 756 on the Dec 2, 2017 version of the file nudup.py

cmd.append("gzip -c -d")

Should be replaced by

cmds.append("gzip -c -d")

This bug probably only happens when a gzipped file is used.

mlovci commented 6 years ago

Thanks for reporting this. We have resolved this bug with #14.

yongchao commented 6 years ago

Thanks.

On Tue, Jan 30, 2018 at 1:38 PM, Michael Lovci notifications@github.com wrote:

Closed #13 https://github.com/nugentechnologies/nudup/issues/13.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/nugentechnologies/nudup/issues/13#event-1449200551, or mute the thread https://github.com/notifications/unsubscribe-auth/ABeGN9e9EVhufLRsWSVZ1e_jZ-rP-i-1ks5tP2GHgaJpZM4RrZMC .